RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 HIP1O00291 1037 aa23.35■■□□□ 1.33
SDF4-205ENST00000465727 ZNF165P49910 485 aa23.35■■□□□ 1.33
SDF4-205ENST00000465727 TPD52L1Q16890 204 aaPredicted RBP23.35■■□□□ 1.33
SDF4-205ENST00000465727 ZNF771Q7L3S4 317 aaPredicted RBP23.35■■□□□ 1.33
SDF4-205ENST00000465727 NECTIN2Q92692 538 aa23.35■■□□□ 1.33
SDF4-205ENST00000465727 CHMP4AQ9BY43 222 aa23.35■■□□□ 1.33
SDF4-205ENST00000465727 TPCN1Q9ULQ1 816 aa23.35■■□□□ 1.33
SDF4-205ENST00000465727 SARM1Q6SZW1 724 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 CKAP2LQ8IYA6 745 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 CLASRPQ8N2M8 674 aaKnown RBP23.34■■□□□ 1.33
SDF4-205ENST00000465727 EYA1Q99502 592 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 ECHDC1Q9NTX5 307 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 HDGFP51858 240 aaKnown RBP23.34■■□□□ 1.33
SDF4-205ENST00000465727 TAF7Q15545 349 aaPredicted RBP23.34■■□□□ 1.33
SDF4-205ENST00000465727 HDGFL1Q5TGJ6 251 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 EVI5LQ96CN4 794 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 NRBP1Q9UHY1 535 aa23.34■■□□□ 1.33
SDF4-205ENST00000465727 CEP135Q66GS9 1140 aa23.33■■□□□ 1.33
SDF4-205ENST00000465727 NECAB1Q8N987 351 aa23.33■■□□□ 1.33
SDF4-205ENST00000465727 KIF18AQ8NI77 898 aa23.33■■□□□ 1.33
SDF4-205ENST00000465727 GIGYF1O75420 1035 aaPredicted RBP23.32■■□□□ 1.32
SDF4-205ENST00000465727 LEO1Q8WVC0 666 aaPredicted RBP23.32■■□□□ 1.32
SDF4-205ENST00000465727 RBM6P78332 1123 aaKnown RBP23.32■■□□□ 1.32
SDF4-205ENST00000465727 MTX1Q13505 466 aa23.32■■□□□ 1.32
SDF4-205ENST00000465727 CREB3L3Q68CJ9 461 aa23.32■■□□□ 1.32
SDF4-205ENST00000465727 ZNF397Q8NF99 534 aaPredicted RBP23.32■■□□□ 1.32
SDF4-205ENST00000465727 CACTINQ8WUQ7 758 aaKnown RBP23.32■■□□□ 1.32
SDF4-205ENST00000465727 MAP4K1Q92918 833 aa23.32■■□□□ 1.32
SDF4-205ENST00000465727 SNRKQ9NRH2 765 aa23.32■■□□□ 1.32
SDF4-205ENST00000465727 CHMP3Q9Y3E7 222 aa23.32■■□□□ 1.32
SDF4-205ENST00000465727 RBM8AQ9Y5S9 174 aaKnown RBP23.32■■□□□ 1.32
SDF4-205ENST00000465727 PTPRUQ92729 1446 aa23.32■■□□□ 1.32
SDF4-205ENST00000465727 FAM193AP78312 1265 aa23.31■■□□□ 1.32
SDF4-205ENST00000465727 FERMT3Q86UX7 667 aa23.31■■□□□ 1.32
SDF4-205ENST00000465727 ERC1Q8IUD2 1116 aa23.31■■□□□ 1.32
SDF4-205ENST00000465727 MRFAP1L1Q96HT8 127 aa23.31■■□□□ 1.32
SDF4-205ENST00000465727 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.31■■□□□ 1.32
SDF4-205ENST00000465727 RNF20Q5VTR2 975 aa23.31■■□□□ 1.32
SDF4-205ENST00000465727 KRT222Q8N1A0 295 aa23.31■■□□□ 1.32
SDF4-205ENST00000465727 FER1L4A9Z1Z3 1794 aa23.3■■□□□ 1.32
SDF4-205ENST00000465727 OS9Q13438 667 aaPredicted RBP23.3■■□□□ 1.32
SDF4-205ENST00000465727 NBPF7P0C2Y1 421 aaPredicted RBP23.29■■□□□ 1.32
SDF4-205ENST00000465727 LRRC8AQ8IWT6 810 aa23.29■■□□□ 1.32
SDF4-205ENST00000465727 PHAXQ9H814 394 aaKnown RBP23.29■■□□□ 1.32
SDF4-205ENST00000465727 SLFN14P0C7P3 912 aa23.29■■□□□ 1.32
SDF4-205ENST00000465727 KCNJ4P48050 445 aa23.29■■□□□ 1.32
SDF4-205ENST00000465727 SLFNL1Q499Z3 407 aa23.29■■□□□ 1.32
SDF4-205ENST00000465727 ROBO2Q9HCK4 1378 aa23.29■■□□□ 1.32
SDF4-205ENST00000465727 HOXB7P09629 217 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 BEND3Q5T5X7 828 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 BLOC1S2Q6QNY1 142 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 DNAJC25Q9H1X3 360 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 GOLGA6L19H0YKK7 550 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 AMPHP49418 695 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 NYAP1Q6ZVC0 841 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 CREBRFQ8IUR6 639 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 IL17REQ8NFR9 667 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 BICD2Q8TD16 824 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 DNAAF4Q8WXU2 420 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 KCND1Q9NSA2 647 aa23.28■■□□□ 1.32
SDF4-205ENST00000465727 NR1I2O75469 434 aa23.27■■□□□ 1.32
SDF4-205ENST00000465727 FAM173BQ6P4H8 233 aa23.27■■□□□ 1.32
SDF4-205ENST00000465727 KIF2AO00139 706 aaPredicted RBP23.26■■□□□ 1.31
SDF4-205ENST00000465727 SLC27A2O14975 620 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 CTAGE5O15320 804 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 IFIT2P09913 472 aaKnown RBP23.26■■□□□ 1.31
SDF4-205ENST00000465727 PTPN14Q15678 1187 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 CCDC144BQ3MJ40 725 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 CCDC144CPQ8IYA2 1237 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 ERO1AQ96HE7 468 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 HDAC5Q9UQL6 1122 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 CCDC66A2RUB6 948 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 RPS6KB1P23443 525 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 FAM53CQ9NYF3 392 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 HMG20BQ9P0W2 317 aa23.26■■□□□ 1.31
SDF4-205ENST00000465727 SOX12O15370 315 aa23.25■■□□□ 1.31
SDF4-205ENST00000465727 IGSF3O75054 1194 aa23.25■■□□□ 1.31
SDF4-205ENST00000465727 IQCB1Q15051 598 aa23.25■■□□□ 1.31
SDF4-205ENST00000465727 TERF2Q15554 542 aa23.25■■□□□ 1.31
SDF4-205ENST00000465727 LARP1Q6PKG0 1096 aaKnown RBP23.25■■□□□ 1.31
SDF4-205ENST00000465727 A0A0U1RQG5 324 aaPredicted RBP23.24■■□□□ 1.31
SDF4-205ENST00000465727 PGBD1Q96JS3 809 aa23.24■■□□□ 1.31
SDF4-205ENST00000465727 TFIP11Q9UBB9 837 aaKnown RBP23.24■■□□□ 1.31
SDF4-205ENST00000465727 CFAP45Q9UL16 551 aa23.24■■□□□ 1.31
SDF4-205ENST00000465727 TSGA10IPQ3SY00 556 aa23.24■■□□□ 1.31
SDF4-205ENST00000465727 ZSCAN16Q9H4T2 348 aaPredicted RBP23.24■■□□□ 1.31
SDF4-205ENST00000465727 NWD1Q149M9 1564 aa23.23■■□□□ 1.31
SDF4-205ENST00000465727 NPHP4O75161 1426 aaPredicted RBP23.23■■□□□ 1.31
SDF4-205ENST00000465727 NAA30Q147X3 362 aaPredicted RBP23.23■■□□□ 1.31
SDF4-205ENST00000465727 STX1AQ16623 288 aa23.23■■□□□ 1.31
SDF4-205ENST00000465727 ZNF592Q92610 1267 aa23.23■■□□□ 1.31
SDF4-205ENST00000465727 JCADQ9P266 1359 aa23.22■■□□□ 1.31
SDF4-205ENST00000465727 DTNBO60941 627 aa23.22■■□□□ 1.31
SDF4-205ENST00000465727 KMT5BQ4FZB7 885 aa23.22■■□□□ 1.31
SDF4-205ENST00000465727 SKILP12757 684 aa23.21■■□□□ 1.31
SDF4-205ENST00000465727 TOB2Q14106 344 aaPredicted RBP23.21■■□□□ 1.31
SDF4-205ENST00000465727 ZNF215Q9UL58 517 aaPredicted RBP23.21■■□□□ 1.31
SDF4-205ENST00000465727 PI4KAP2A4QPH2 592 aa23.21■■□□□ 1.31
SDF4-205ENST00000465727 RESTQ13127 1097 aa23.21■■□□□ 1.31
SDF4-205ENST00000465727 NMIQ13287 307 aaPredicted RBP23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms