RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 UBR2Q8IWV8 1755 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 TEFQ10587 303 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 STK3Q13188 491 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 FBXW7Q969H0 707 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 CHMP4AQ9BY43 222 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 TFIP11Q9UBB9 837 aaKnown RBP14.88□□□□□ -0.03
HDAC4-208ENST00000463007 DBF4Q9UBU7 674 aaPredicted RBP14.88□□□□□ -0.03
HDAC4-208ENST00000463007 SHANK3Q9BYB0 1731 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 PRPF40BQ6NWY9 871 aaKnown RBP14.88□□□□□ -0.03
HDAC4-208ENST00000463007 PI4K2BQ8TCG2 481 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 CCDC9Q9Y3X0 531 aaKnown RBP14.88□□□□□ -0.03
HDAC4-208ENST00000463007 PAPPAQ13219 1627 aa14.88□□□□□ -0.03
HDAC4-208ENST00000463007 PRAMEF22A3QJZ6 481 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 CUL4AQ13619 759 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 CCDC183Q5T5S1 534 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 JAKMIP1Q96N16 626 aaKnown RBP14.87□□□□□ -0.03
HDAC4-208ENST00000463007 MAP7D2Q96T17 732 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 CPDO75976 1380 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 RAB11FIP3O75154 756 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 PYCARDQ9ULZ3 195 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 ZSCAN22P10073 491 aaPredicted RBP14.87□□□□□ -0.03
HDAC4-208ENST00000463007 GJB2P29033 226 aa14.87□□□□□ -0.03
HDAC4-208ENST00000463007 STRCQ7RTU9 1775 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 ADCK5Q3MIX3 580 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 C1orf141Q5JVX7 400 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 RUFY3Q7L099 469 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 ZNF592Q92610 1267 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 SNX14Q9Y5W7 946 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 AP5Z1O43299 807 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 MCM5P33992 734 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 CEBPZQ03701 1054 aaKnown RBP14.86□□□□□ -0.03
HDAC4-208ENST00000463007 LRP10Q7Z4F1 713 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 DIAPH3Q9NSV4 1193 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.86□□□□□ -0.031e-6■□□□□ 9.5
HDAC4-208ENST00000463007 ARFGEF2Q9Y6D5 1785 aa14.86□□□□□ -0.03
HDAC4-208ENST00000463007 COL9A3Q14050 684 aaPredicted RBP14.85□□□□□ -0.03
HDAC4-208ENST00000463007 KIF3AQ9Y496 699 aa14.85□□□□□ -0.03
HDAC4-208ENST00000463007 NPHP3Q7Z494 1330 aa14.85□□□□□ -0.03
HDAC4-208ENST00000463007 ALDH1L1O75891 902 aa14.85□□□□□ -0.03
HDAC4-208ENST00000463007 LUZP1Q86V48 1076 aa14.85□□□□□ -0.03
HDAC4-208ENST00000463007 ZNF710Q8N1W2 664 aa14.85□□□□□ -0.03
HDAC4-208ENST00000463007 MYRIPQ8NFW9 859 aa14.85□□□□□ -0.03
HDAC4-208ENST00000463007 C16orf45Q96MC5 204 aaPredicted RBP14.85□□□□□ -0.03
HDAC4-208ENST00000463007 EPB41L2O43491 1005 aaKnown RBP14.84□□□□□ -0.03
HDAC4-208ENST00000463007 RHPN1Q8TCX5 695 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 PIBF1Q8WXW3 757 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 KAZALD1Q96I82 304 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 PRDM4Q9UKN5 801 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 PA2G4Q9UQ80 394 aaKnown RBP14.84□□□□□ -0.03
HDAC4-208ENST00000463007 GOLGA6L4A6NEF3 574 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 TERF1P54274 439 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 PTH1RQ03431 593 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 KSR2Q6VAB6 950 aa14.84□□□□□ -0.03
HDAC4-208ENST00000463007 INTS4Q96HW7 963 aaKnown RBP14.84□□□□□ -0.03
HDAC4-208ENST00000463007 F13A1P00488 732 aa14.83□□□□□ -0.03
HDAC4-208ENST00000463007 PHKG2P15735 406 aa14.83□□□□□ -0.03
HDAC4-208ENST00000463007 PTGS1P23219 599 aa14.83□□□□□ -0.03
HDAC4-208ENST00000463007 LRMPQ12912 555 aa14.83□□□□□ -0.03
HDAC4-208ENST00000463007 ATP2B3Q16720 1220 aa14.83□□□□□ -0.03
HDAC4-208ENST00000463007 LIMCH1Q9UPQ0 1083 aa14.83□□□□□ -0.03
HDAC4-208ENST00000463007 NUP188Q5SRE5 1749 aa14.83□□□□□ -0.04
HDAC4-208ENST00000463007 KDM4AO75164 1064 aa14.83□□□□□ -0.04
HDAC4-208ENST00000463007 HSPA4P34932 840 aa14.83□□□□□ -0.04
HDAC4-208ENST00000463007 DDX17Q92841 729 aaKnown RBP14.83□□□□□ -0.04
HDAC4-208ENST00000463007 SLC52A2Q9HAB3 445 aa14.83□□□□□ -0.04
HDAC4-208ENST00000463007 U2AF2P26368 475 aaKnown RBP eCLIP14.83□□□□□ -0.04
HDAC4-208ENST00000463007 BCL2L12Q9HB09 334 aa14.83□□□□□ -0.04
HDAC4-208ENST00000463007 MAP3K2Q9Y2U5 619 aa14.83□□□□□ -0.04
HDAC4-208ENST00000463007 SPATA31A3Q5VYP0 1347 aa14.82□□□□□ -0.04
HDAC4-208ENST00000463007 RIOK3O14730 519 aaKnown RBP14.82□□□□□ -0.04
HDAC4-208ENST00000463007 UBE2HP62256 183 aa14.82□□□□□ -0.04
HDAC4-208ENST00000463007 CHAF1AQ13111 956 aaPredicted RBP14.82□□□□□ -0.04
HDAC4-208ENST00000463007 NAA30Q147X3 362 aaPredicted RBP14.82□□□□□ -0.04
HDAC4-208ENST00000463007 SIL1Q9H173 461 aa14.82□□□□□ -0.04
HDAC4-208ENST00000463007 DDX21Q9NR30 783 aaKnown RBP eCLIP14.82□□□□□ -0.04
HDAC4-208ENST00000463007 A0A087WWV3 80 aa14.82□□□□□ -0.04
HDAC4-208ENST00000463007 CCDC94Q9BW85 323 aaPredicted RBP14.82□□□□□ -0.04
HDAC4-208ENST00000463007 HYPKQ9NX55 129 aa14.82□□□□□ -0.04
HDAC4-208ENST00000463007 NRBP1Q9UHY1 535 aa14.82□□□□□ -0.04
HDAC4-208ENST00000463007 NPHP1O15259 732 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 ANAPC15P60006 121 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 ZC3H6P61129 1189 aaKnown RBP14.81□□□□□ -0.04
HDAC4-208ENST00000463007 ZNF790Q6PG37 636 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 KIF1BPQ96EK5 621 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 PDRG1Q9NUG6 133 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 AFDNP55196 1824 aaKnown RBP14.81□□□□□ -0.04
HDAC4-208ENST00000463007 RPAP1Q9BWH6 1393 aaPredicted RBP14.81□□□□□ -0.04
HDAC4-208ENST00000463007 LARP1BQ659C4 914 aaKnown RBP14.81□□□□□ -0.04
HDAC4-208ENST00000463007 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.81□□□□□ -0.04
HDAC4-208ENST00000463007 CNTROBQ8N137 903 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 DDX11Q96FC9 970 aa14.81□□□□□ -0.04
HDAC4-208ENST00000463007 NAP1L2Q9ULW6 460 aaPredicted RBP14.81□□□□□ -0.04
HDAC4-208ENST00000463007 SGSM2O43147 1006 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 TRIM5Q9C035 493 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 TJP1Q07157 1748 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 LIG1P18858 919 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 PDCL2Q8N4E4 241 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 FAM184AQ8NB25 1140 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 KCNF1Q9H3M0 494 aa14.8□□□□□ -0.04
HDAC4-208ENST00000463007 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms