RNA–Protein interactions for RNA: ENST00000462597.1

PDLIM4-204, Transcript of PDZ and LIM domain 4, humanhuman

TSL 3

Gene PDLIM4, Length 767 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-204ENST00000462597 RBM46Q8TBY0 533 aaKnown RBP23.96■■□□□ 1.43
PDLIM4-204ENST00000462597 IL16Q14005 1332 aa23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 NTSR2O95665 410 aa23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 ZNF853P0CG23 659 aa23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 AIMP1Q12904 312 aaKnown RBP23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 CCDC93Q567U6 631 aa23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 SOGA3Q5TF21 947 aa23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 MBIPQ9NS73 344 aa23.95■■□□□ 1.42
PDLIM4-204ENST00000462597 RIC1Q4ADV7 1423 aa23.94■■□□□ 1.42
PDLIM4-204ENST00000462597 WDR90Q96KV7 1748 aa23.94■■□□□ 1.42
PDLIM4-204ENST00000462597 CRY2Q49AN0 593 aa23.94■■□□□ 1.42
PDLIM4-204ENST00000462597 XAGE3Q8WTP9 111 aa23.94■■□□□ 1.42
PDLIM4-204ENST00000462597 COPS6Q7L5N1 327 aa23.93■■□□□ 1.42
PDLIM4-204ENST00000462597 CHPF2Q9P2E5 772 aa23.93■■□□□ 1.42
PDLIM4-204ENST00000462597 C3orf67Q6ZVT6 689 aa23.92■■□□□ 1.42
PDLIM4-204ENST00000462597 TSR2Q969E8 191 aaKnown RBP23.92■■□□□ 1.42
PDLIM4-204ENST00000462597 LAMB2P55268 1798 aa23.91■■□□□ 1.42
PDLIM4-204ENST00000462597 SLC51AQ86UW1 340 aa23.91■■□□□ 1.42
PDLIM4-204ENST00000462597 DDX21Q9NR30 783 aaKnown RBP eCLIP23.91■■□□□ 1.42
PDLIM4-204ENST00000462597 VEGFAP15692 232 aaPredicted RBP23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 ALDH1B1P30837 517 aa23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 PARP10Q53GL7 1025 aa23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 HDGFL1Q5TGJ6 251 aa23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 RPGRQ92834 1020 aaKnown RBP23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 SPINK5Q9NQ38 1064 aaPredicted RBP23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 ZNF277Q9NRM2 450 aaPredicted RBP23.9■■□□□ 1.42
PDLIM4-204ENST00000462597 POTECB2RU33 542 aa23.89■■□□□ 1.41
PDLIM4-204ENST00000462597 APLP1P51693 650 aa23.89■■□□□ 1.41
PDLIM4-204ENST00000462597 FKBP4Q02790 459 aaKnown RBP eCLIP23.89■■□□□ 1.41
PDLIM4-204ENST00000462597 PPP1R42Q7Z4L9 355 aa23.89■■□□□ 1.41
PDLIM4-204ENST00000462597 SNED1Q8TER0 1413 aa23.89■■□□□ 1.41
PDLIM4-204ENST00000462597 GOLGA2Q08379 1002 aa23.88■■□□□ 1.41
PDLIM4-204ENST00000462597 FSTL1Q12841 308 aa23.88■■□□□ 1.41
PDLIM4-204ENST00000462597 DPY19L2Q6NUT2 758 aa23.88■■□□□ 1.41
PDLIM4-204ENST00000462597 ZNF428Q96B54 188 aa23.88■■□□□ 1.41
PDLIM4-204ENST00000462597 FANCIQ9NVI1 1328 aa23.87■■□□□ 1.41
PDLIM4-204ENST00000462597 DDNO94850 711 aaPredicted RBP23.87■■□□□ 1.41
PDLIM4-204ENST00000462597 HTRA3P83110 453 aa23.87■■□□□ 1.41
PDLIM4-204ENST00000462597 DUSP27Q5VZP5 1158 aa23.87■■□□□ 1.41
PDLIM4-204ENST00000462597 UTP14AQ9BVJ6 771 aaKnown RBP23.87■■□□□ 1.41
PDLIM4-204ENST00000462597 HOXA10P31260 410 aaPredicted RBP23.86■■□□□ 1.41
PDLIM4-204ENST00000462597 NLRP10Q86W26 655 aa23.86■■□□□ 1.41
PDLIM4-204ENST00000462597 RTKN2Q8IZC4 609 aa23.86■■□□□ 1.41
PDLIM4-204ENST00000462597 MYH16Q9H6N6 1097 aa23.86■■□□□ 1.41
PDLIM4-204ENST00000462597 TCERG1O14776 1098 aaKnown RBP23.85■■□□□ 1.41
PDLIM4-204ENST00000462597 HOXB7P09629 217 aa23.85■■□□□ 1.41
PDLIM4-204ENST00000462597 SYNE4Q8N205 404 aa23.85■■□□□ 1.41
PDLIM4-204ENST00000462597 SMC1BQ8NDV3 1235 aa23.85■■□□□ 1.41
PDLIM4-204ENST00000462597 ZBED9Q6R2W3 1325 aa23.84■■□□□ 1.41
PDLIM4-204ENST00000462597 ZNF541Q9H0D2 1346 aa23.84■■□□□ 1.41
PDLIM4-204ENST00000462597 HSP90AB3PQ58FF7 597 aa23.84■■□□□ 1.41
PDLIM4-204ENST00000462597 RBM17Q96I25 401 aaKnown RBP23.84■■□□□ 1.41
PDLIM4-204ENST00000462597 COL4A5P29400 1685 aa23.83■■□□□ 1.41
PDLIM4-204ENST00000462597 E9PSI1 815 aa23.83■■□□□ 1.41
PDLIM4-204ENST00000462597 TCIRG1Q13488 830 aa23.83■■□□□ 1.41
PDLIM4-204ENST00000462597 CDCA7LQ96GN5 454 aa23.83■■□□□ 1.41
PDLIM4-204ENST00000462597 DBF4Q9UBU7 674 aaPredicted RBP23.83■■□□□ 1.41
PDLIM4-204ENST00000462597 DDX60Q8IY21 1712 aaKnown RBP23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 ELL2O00472 640 aaPredicted RBP23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 PPEF1O14829 653 aaPredicted RBP23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 HCLS1P14317 486 aaPredicted RBP23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 IARSP41252 1262 aaKnown RBP23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 NLRP3Q96P20 1036 aa23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 CRAMP1Q96RY5 1269 aa23.82■■□□□ 1.4
PDLIM4-204ENST00000462597 SLFN5Q08AF3 891 aa23.81■■□□□ 1.4
PDLIM4-204ENST00000462597 SLC10A5Q5PT55 438 aa23.81■■□□□ 1.4
PDLIM4-204ENST00000462597 PLBD2Q8NHP8 589 aa23.81■■□□□ 1.4
PDLIM4-204ENST00000462597 TRMT112Q9UI30 125 aaKnown RBP23.81■■□□□ 1.4
PDLIM4-204ENST00000462597 TAF1P21675 1872 aa23.81■■□□□ 1.4
PDLIM4-204ENST00000462597 DNAJC5GQ8N7S2 189 aa23.8■■□□□ 1.4
PDLIM4-204ENST00000462597 C8orf58Q8NAV2 365 aa23.8■■□□□ 1.4
PDLIM4-204ENST00000462597 YTHDC1Q96MU7 727 aaKnown RBP23.8■■□□□ 1.4
PDLIM4-204ENST00000462597 ABCC4O15439 1325 aa23.8■■□□□ 1.4
PDLIM4-204ENST00000462597 RNF123Q5XPI4 1314 aa23.8■■□□□ 1.4
PDLIM4-204ENST00000462597 POTEIP0CG38 1075 aa23.79■■□□□ 1.4
PDLIM4-204ENST00000462597 POTEJP0CG39 1038 aa23.79■■□□□ 1.4
PDLIM4-204ENST00000462597 ANKRD13DQ6ZTN6 518 aa23.79■■□□□ 1.4
PDLIM4-204ENST00000462597 PSMD1Q99460 953 aa23.79■■□□□ 1.4
PDLIM4-204ENST00000462597 HYPKQ9NX55 129 aa23.79■■□□□ 1.4
PDLIM4-204ENST00000462597 SCN4AP35499 1836 aa23.78■■□□□ 1.4
PDLIM4-204ENST00000462597 ATP5J2-PTCD1G3V325 749 aa23.78■■□□□ 1.4
PDLIM4-204ENST00000462597 EXOSC9Q06265 439 aaKnown RBP23.78■■□□□ 1.4
PDLIM4-204ENST00000462597 TSPYL6Q8N831 410 aa23.78■■□□□ 1.4
PDLIM4-204ENST00000462597 SH3TC1Q8TE82 1336 aa23.78■■□□□ 1.4
PDLIM4-204ENST00000462597 CC2D2BQ6DHV5 1058 aa23.77■■□□□ 1.4
PDLIM4-204ENST00000462597 TWISTNBQ3B726 338 aaPredicted RBP23.76■■□□□ 1.39
PDLIM4-204ENST00000462597 ISCA1Q9BUE6 129 aa23.76■■□□□ 1.39
PDLIM4-204ENST00000462597 PHAXQ9H814 394 aaKnown RBP23.76■■□□□ 1.39
PDLIM4-204ENST00000462597 CACNA1FO60840 1977 aa23.75■■□□□ 1.39
PDLIM4-204ENST00000462597 L3MBTL3Q96JM7 780 aaPredicted RBP23.75■■□□□ 1.39
PDLIM4-204ENST00000462597 FZD9O00144 591 aa23.74■■□□□ 1.39
PDLIM4-204ENST00000462597 RTL5Q5HYW3 569 aaPredicted RBP23.74■■□□□ 1.39
PDLIM4-204ENST00000462597 TRMT2AQ8IZ69 625 aaKnown RBP23.74■■□□□ 1.39
PDLIM4-204ENST00000462597 FAM89AQ96GI7 184 aa23.74■■□□□ 1.39
PDLIM4-204ENST00000462597 ATP6V0A2Q9Y487 856 aa23.74■■□□□ 1.39
PDLIM4-204ENST00000462597 COL4A1P02462 1669 aa23.73■■□□□ 1.39
PDLIM4-204ENST00000462597 JDP2Q8WYK2 163 aa23.73■■□□□ 1.39
PDLIM4-204ENST00000462597 IQCA1LA6NCM1 817 aa23.72■■□□□ 1.39
PDLIM4-204ENST00000462597 LARGE2Q8N3Y3 721 aa23.72■■□□□ 1.39
PDLIM4-204ENST00000462597 TAF1DQ9H5J8 278 aaPredicted RBP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms