RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PBXIP1Q96AQ6 731 aa7.73□□□□□ -1.17
USP40-209ENST00000452724 HOXB4P17483 251 aaPredicted RBP7.72□□□□□ -1.17
USP40-209ENST00000452724 TYRO3Q06418 890 aa7.72□□□□□ -1.17
USP40-209ENST00000452724 FAM200AQ8TCP9 573 aa7.72□□□□□ -1.17
USP40-209ENST00000452724 SPDYE3A6NKU9 549 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 ADARB2-AS1A8MUL3 147 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 PPP1R15AO75807 674 aaPredicted RBP7.71□□□□□ -1.18
USP40-209ENST00000452724 SRPK2P78362 688 aaKnown RBP7.71□□□□□ -1.18
USP40-209ENST00000452724 CDCA8Q53HL2 280 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 IER5Q5VY09 327 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 BTLAQ7Z6A9 289 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 ZNF280CQ8ND82 737 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 SLC30A3Q99726 388 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 EFCC1Q9HA90 598 aa7.71□□□□□ -1.18
USP40-209ENST00000452724 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.71□□□□□ -1.18
USP40-209ENST00000452724 FOXO3O43524 673 aa7.7□□□□□ -1.18
USP40-209ENST00000452724 TNFRSF25Q93038 417 aa7.7□□□□□ -1.18
USP40-209ENST00000452724 TGFBR3LH3BV60 316 aa7.69□□□□□ -1.18
USP40-209ENST00000452724 EPB42P16452 691 aa7.69□□□□□ -1.18
USP40-209ENST00000452724 COL8A1P27658 744 aa7.69□□□□□ -1.18
USP40-209ENST00000452724 ARXQ96QS3 562 aa7.69□□□□□ -1.18
USP40-209ENST00000452724 SPOCK3Q9BQ16 436 aa7.69□□□□□ -1.18
USP40-209ENST00000452724 SUV39H2Q9H5I1 410 aa7.69□□□□□ -1.18
USP40-209ENST00000452724 KRBA1A5PL33 1030 aa7.68□□□□□ -1.18
USP40-209ENST00000452724 BHMTQ93088 406 aa7.68□□□□□ -1.18
USP40-209ENST00000452724 PNMA5Q96PV4 448 aa7.68□□□□□ -1.18
USP40-209ENST00000452724 LGR5O75473 907 aa7.67□□□□□ -1.18
USP40-209ENST00000452724 WEE1P30291 646 aa7.67□□□□□ -1.18
USP40-209ENST00000452724 ADH7P40394 386 aa7.67□□□□□ -1.18
USP40-209ENST00000452724 SUZ12Q15022 739 aaKnown RBP7.67□□□□□ -1.18
USP40-209ENST00000452724 RAB44Q7Z6P3 723 aaPredicted RBP7.67□□□□□ -1.18
USP40-209ENST00000452724 NOVA2Q9UNW9 492 aaKnown RBP7.67□□□□□ -1.18
USP40-209ENST00000452724 ATG7O95352 703 aa7.66□□□□□ -1.18
USP40-209ENST00000452724 PRRT3Q5FWE3 981 aa7.66□□□□□ -1.18
USP40-209ENST00000452724 MDFIQ99750 246 aa7.66□□□□□ -1.18
USP40-209ENST00000452724 PLVAPQ9BX97 442 aa7.66□□□□□ -1.18
USP40-209ENST00000452724 M0R082 166 aa7.65□□□□□ -1.18
USP40-209ENST00000452724 SPATA31C1P0DKV0 1188 aa7.65□□□□□ -1.18
USP40-209ENST00000452724 SWI5Q1ZZU3 235 aa7.65□□□□□ -1.18
USP40-209ENST00000452724 ZNF417Q8TAU3 575 aa7.65□□□□□ -1.18
USP40-209ENST00000452724 ZNF587Q96SQ5 575 aaPredicted RBP7.65□□□□□ -1.18
USP40-209ENST00000452724 UBE2OQ9C0C9 1292 aaKnown RBP7.65□□□□□ -1.18
USP40-209ENST00000452724 ACIN1Q9UKV3 1341 aaKnown RBP7.65□□□□□ -1.18
USP40-209ENST00000452724 PROCP04070 461 aa7.64□□□□□ -1.19
USP40-209ENST00000452724 ITGB2P05107 769 aa7.64□□□□□ -1.19
USP40-209ENST00000452724 TBC1D8BQ0IIM8 1120 aa7.64□□□□□ -1.19
USP40-209ENST00000452724 CCINQ13939 588 aa7.64□□□□□ -1.19
USP40-209ENST00000452724 ELOAQ14241 798 aaKnown RBP7.64□□□□□ -1.19
USP40-209ENST00000452724 TRIM11Q96F44 468 aa7.64□□□□□ -1.19
USP40-209ENST00000452724 PRDM6Q9NQX0 595 aa7.64□□□□□ -1.19
USP40-209ENST00000452724 IDH3AP50213 366 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 DGKZQ13574 1117 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 PCSK7Q16549 785 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 C11orf91Q3C1V1 193 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 MYO19Q96H55 970 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 IGFLR1Q9H665 355 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 C11orf16Q9NQ32 467 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 KLK14Q9P0G3 267 aa7.63□□□□□ -1.19
USP40-209ENST00000452724 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.63□□□□□ -1.19
USP40-209ENST00000452724 ARSDP51689 593 aa7.62□□□□□ -1.19
USP40-209ENST00000452724 MICALL1Q8N3F8 863 aa7.62□□□□□ -1.19
USP40-209ENST00000452724 GSX2Q9BZM3 304 aa7.62□□□□□ -1.19
USP40-209ENST00000452724 QTRT2Q9H974 415 aaKnown RBP7.62□□□□□ -1.19
USP40-209ENST00000452724 DMGDHQ9UI17 866 aaKnown RBP7.62□□□□□ -1.19
USP40-209ENST00000452724 ZMIZ1Q9ULJ6 1067 aa7.62□□□□□ -1.19
USP40-209ENST00000452724 BCS1LQ9Y276 419 aa7.62□□□□□ -1.19
USP40-209ENST00000452724 C1QTNF9BB2RNN3 333 aa7.61□□□□□ -1.19
USP40-209ENST00000452724 LILRB5O75023 590 aa7.61□□□□□ -1.19
USP40-209ENST00000452724 APBA3O96018 575 aa7.61□□□□□ -1.19
USP40-209ENST00000452724 ALBP02768 609 aa7.61□□□□□ -1.19
USP40-209ENST00000452724 ARID4AP29374 1257 aaPredicted RBP7.61□□□□□ -1.19
USP40-209ENST00000452724 STARD13Q9Y3M8 1113 aa7.61□□□□□ -1.19
USP40-209ENST00000452724 MICAL2O94851 1124 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 NFKB1P19838 968 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 INPP5BP32019 993 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 BAG6P46379 1132 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 TRIM28Q13263 835 aaKnown RBP7.6□□□□□ -1.19
USP40-209ENST00000452724 CD163Q86VB7 1156 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 STK32AQ8WU08 396 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 IFT43Q96FT9 208 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 NACC1Q96RE7 527 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 SLC6A14Q9UN76 642 aa7.6□□□□□ -1.19
USP40-209ENST00000452724 RETREG2Q8NC44 543 aa7.59□□□□□ -1.19
USP40-209ENST00000452724 PRMT3O60678 531 aa7.58□□□□□ -1.2
USP40-209ENST00000452724 ADAM23O75077 832 aa7.58□□□□□ -1.2
USP40-209ENST00000452724 MAP3K6O95382 1288 aa7.58□□□□□ -1.2
USP40-209ENST00000452724 CHRNA4P43681 627 aa7.58□□□□□ -1.2
USP40-209ENST00000452724 TMEM164Q5U3C3 297 aa7.58□□□□□ -1.2
USP40-209ENST00000452724 PRIMPOLQ96LW4 560 aa7.58□□□□□ -1.2
USP40-209ENST00000452724 JPH1Q9HDC5 661 aaPredicted RBP7.58□□□□□ -1.2
USP40-209ENST00000452724 DNAJB12Q9NXW2 375 aaKnown RBP7.58□□□□□ -1.2
USP40-209ENST00000452724 K7ELQ4 463 aaPredicted RBP7.57□□□□□ -1.2
USP40-209ENST00000452724 FKBP5Q13451 457 aaPredicted RBP7.57□□□□□ -1.2
USP40-209ENST00000452724 TRAPPC3LQ5T215 181 aa7.57□□□□□ -1.2
USP40-209ENST00000452724 C20orf204Q6ZNR8 217 aa7.57□□□□□ -1.2
USP40-209ENST00000452724 C8orf86Q6ZUL3 223 aa7.57□□□□□ -1.2
USP40-209ENST00000452724 PTCD1O75127 700 aaKnown RBP7.56□□□□□ -1.2
USP40-209ENST00000452724 RGS9O75916 674 aaPredicted RBP7.56□□□□□ -1.2
USP40-209ENST00000452724 RARAP10276 462 aa7.56□□□□□ -1.2
USP40-209ENST00000452724 NID1P14543 1247 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms