RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CRAMP1Q96RY5 1269 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 BABAM1Q9NWV8 329 aa17.47■□□□□ 0.39
HMGB3-204ENST00000448905 SCN7AQ01118 1682 aa17.46■□□□□ 0.39
HMGB3-204ENST00000448905 RIPK4P57078 832 aa17.46■□□□□ 0.39
HMGB3-204ENST00000448905 LMOD3Q0VAK6 560 aa17.46■□□□□ 0.39
HMGB3-204ENST00000448905 SUSD4Q5VX71 490 aa17.46■□□□□ 0.39
HMGB3-204ENST00000448905 ZNF34Q8IZ26 560 aa17.46■□□□□ 0.39
HMGB3-204ENST00000448905 THUMPD2Q9BTF0 503 aaKnown RBP17.46■□□□□ 0.39
HMGB3-204ENST00000448905 EIF2S2P20042 333 aaKnown RBP17.45■□□□□ 0.38
HMGB3-204ENST00000448905 LMOD1P29536 600 aaPredicted RBP17.45■□□□□ 0.38
HMGB3-204ENST00000448905 CNTROBQ8N137 903 aa17.45■□□□□ 0.38
HMGB3-204ENST00000448905 ZNF541Q9H0D2 1346 aa17.45■□□□□ 0.38
HMGB3-204ENST00000448905 ITGBL1O95965 494 aaPredicted RBP17.44■□□□□ 0.38
HMGB3-204ENST00000448905 RALBP1Q15311 655 aa17.44■□□□□ 0.38
HMGB3-204ENST00000448905 LARGE2Q8N3Y3 721 aa17.44■□□□□ 0.38
HMGB3-204ENST00000448905 UTP14AQ9BVJ6 771 aaKnown RBP17.44■□□□□ 0.38
HMGB3-204ENST00000448905 VPS33BQ9H267 617 aa17.44■□□□□ 0.38
HMGB3-204ENST00000448905 GJA3Q9Y6H8 435 aa17.44■□□□□ 0.38
HMGB3-204ENST00000448905 PASKQ96RG2 1323 aa17.44■□□□□ 0.38
HMGB3-204ENST00000448905 TCERG1O14776 1098 aaKnown RBP17.43■□□□□ 0.38
HMGB3-204ENST00000448905 AIDAQ96BJ3 306 aa17.43■□□□□ 0.38
HMGB3-204ENST00000448905 PPEF1O14829 653 aaPredicted RBP17.42■□□□□ 0.38
HMGB3-204ENST00000448905 HSP90AB3PQ58FF7 597 aa17.42■□□□□ 0.38
HMGB3-204ENST00000448905 SLC10A5Q5PT55 438 aa17.42■□□□□ 0.38
HMGB3-204ENST00000448905 SUPT20HQ8NEM7 779 aa17.42■□□□□ 0.38
HMGB3-204ENST00000448905 RNF123Q5XPI4 1314 aa17.42■□□□□ 0.38
HMGB3-204ENST00000448905 IBTKQ9P2D0 1353 aaPredicted RBP17.41■□□□□ 0.38
HMGB3-204ENST00000448905 BBOX1O75936 387 aa17.41■□□□□ 0.38
HMGB3-204ENST00000448905 DEFB115Q30KQ5 88 aa17.41■□□□□ 0.38
HMGB3-204ENST00000448905 NIM1KQ8IY84 436 aa17.41■□□□□ 0.38
HMGB3-204ENST00000448905 UBN2Q6ZU65 1347 aa17.41■□□□□ 0.38
HMGB3-204ENST00000448905 CNTNAP1P78357 1384 aa17.4■□□□□ 0.38
HMGB3-204ENST00000448905 NTSR2O95665 410 aa17.4■□□□□ 0.38
HMGB3-204ENST00000448905 MAP1SQ66K74 1059 aaPredicted RBP17.4■□□□□ 0.38
HMGB3-204ENST00000448905 BCORQ6W2J9 1755 aa17.4■□□□□ 0.38
HMGB3-204ENST00000448905 TMPOP42166 694 aaKnown RBP17.39■□□□□ 0.37
HMGB3-204ENST00000448905 VEGFBP49765 207 aa17.39■□□□□ 0.37
HMGB3-204ENST00000448905 ATP6V0A2Q9Y487 856 aa17.39■□□□□ 0.37
HMGB3-204ENST00000448905 ABCC12Q96J65 1359 aa17.39■□□□□ 0.37
HMGB3-204ENST00000448905 PPIP5K2O43314 1243 aa17.38■□□□□ 0.37
HMGB3-204ENST00000448905 CTCFP49711 727 aaPredicted RBP17.38■□□□□ 0.37
HMGB3-204ENST00000448905 AIMP1Q12904 312 aaKnown RBP17.38■□□□□ 0.37
HMGB3-204ENST00000448905 PDIA6Q15084 440 aa17.38■□□□□ 0.37
HMGB3-204ENST00000448905 USP50Q70EL3 339 aaPredicted RBP17.38■□□□□ 0.37
HMGB3-204ENST00000448905 COPS6Q7L5N1 327 aa17.38■□□□□ 0.37
HMGB3-204ENST00000448905 ABT1Q9ULW3 272 aaKnown RBP17.38■□□□□ 0.37
HMGB3-204ENST00000448905 DDX46Q7L014 1031 aaKnown RBP17.37■□□□□ 0.37
HMGB3-204ENST00000448905 PRDM10Q9NQV6 1147 aa17.37■□□□□ 0.37
HMGB3-204ENST00000448905 TRMT112Q9UI30 125 aaKnown RBP17.37■□□□□ 0.37
HMGB3-204ENST00000448905 ARFGEF2Q9Y6D5 1785 aa17.36■□□□□ 0.37
HMGB3-204ENST00000448905 MAP2K1Q02750 393 aaPredicted RBP17.36■□□□□ 0.37
HMGB3-204ENST00000448905 TCIRG1Q13488 830 aa17.36■□□□□ 0.37
HMGB3-204ENST00000448905 NEUROD2Q15784 382 aa17.36■□□□□ 0.37
HMGB3-204ENST00000448905 DPP8Q6V1X1 898 aaPredicted RBP17.36■□□□□ 0.37
HMGB3-204ENST00000448905 SP8Q8IXZ3 490 aa17.36■□□□□ 0.37
HMGB3-204ENST00000448905 DDX21Q9NR30 783 aaKnown RBP eCLIP17.36■□□□□ 0.37
HMGB3-204ENST00000448905 ZNRF3Q9ULT6 936 aa17.36■□□□□ 0.37
HMGB3-204ENST00000448905 LAS1LQ9Y4W2 734 aaKnown RBP17.36■□□□□ 0.37
HMGB3-204ENST00000448905 RIC1Q4ADV7 1423 aa17.36■□□□□ 0.37
HMGB3-204ENST00000448905 RASSF10A6NK89 507 aa17.35■□□□□ 0.37
HMGB3-204ENST00000448905 FOXN1O15353 648 aa17.35■□□□□ 0.37
HMGB3-204ENST00000448905 EPS15P42566 896 aa17.35■□□□□ 0.37
HMGB3-204ENST00000448905 WDR43Q15061 677 aaKnown RBP eCLIP17.35■□□□□ 0.37
HMGB3-204ENST00000448905 MPNDQ8N594 471 aa17.35■□□□□ 0.37
HMGB3-204ENST00000448905 XAGE3Q8WTP9 111 aa17.35■□□□□ 0.37
HMGB3-204ENST00000448905 NECTIN2Q92692 538 aa17.35■□□□□ 0.37
HMGB3-204ENST00000448905 TNIP1Q15025 636 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 AOC3Q16853 763 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 C3orf67Q6ZVT6 689 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 TMC4Q7Z404 712 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 LRP10Q7Z4F1 713 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 NLRP10Q86W26 655 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 RTFDC1Q9BY42 306 aaPredicted RBP17.34■□□□□ 0.37
HMGB3-204ENST00000448905 ADARB2Q9NS39 739 aaKnown RBP17.34■□□□□ 0.37
HMGB3-204ENST00000448905 WBP1LQ9NX94 342 aa17.34■□□□□ 0.37
HMGB3-204ENST00000448905 SH3TC1Q8TE82 1336 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 CHL1O00533 1208 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 ANXA1P04083 346 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 HCLS1P14317 486 aaPredicted RBP17.33■□□□□ 0.36
HMGB3-204ENST00000448905 ECE1P42892 770 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 SCNN1DP51172 638 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 PROSER3Q2NL68 480 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 SLC51AQ86UW1 340 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 RUNDC1Q96C34 613 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 BEGAINQ9BUH8 593 aa17.33■□□□□ 0.36
HMGB3-204ENST00000448905 WDR33Q9C0J8 1336 aaKnown RBP17.32■□□□□ 0.36
HMGB3-204ENST00000448905 GPRC5DQ9NZD1 345 aa17.32■□□□□ 0.36
HMGB3-204ENST00000448905 SCN4AP35499 1836 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 ABCC4O15439 1325 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 MYBBP1AQ9BQG0 1328 aaKnown RBP17.31■□□□□ 0.36
HMGB3-204ENST00000448905 CXCL9Q07325 125 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 DDX10Q13206 875 aaKnown RBP17.31■□□□□ 0.36
HMGB3-204ENST00000448905 GRAPQ13588 217 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 CIAPIN1Q6FI81 312 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 ANKRD13DQ6ZTN6 518 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 PAXIP1Q6ZW49 1069 aaPredicted RBP17.31■□□□□ 0.36
HMGB3-204ENST00000448905 GRAPLQ8TC17 118 aaPredicted RBP17.31■□□□□ 0.36
HMGB3-204ENST00000448905 BCL2L13Q9BXK5 485 aa17.31■□□□□ 0.36
HMGB3-204ENST00000448905 DBF4Q9UBU7 674 aaPredicted RBP17.31■□□□□ 0.36
HMGB3-204ENST00000448905 HOXB7P09629 217 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms