RNA–Protein interactions for RNA: ENST00000442714.5

HDLBP-219, Transcript of high density lipoprotein binding protein, humanhuman

TSL 4

Gene HDLBP, Length 569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDLBP-219ENST00000442714 PPP1R42Q7Z4L9 355 aa13.35□□□□□ -0.27
HDLBP-219ENST00000442714 PNMA8AQ86V59 439 aaPredicted RBP13.35□□□□□ -0.27
HDLBP-219ENST00000442714 JDP2Q8WYK2 163 aa13.35□□□□□ -0.27
HDLBP-219ENST00000442714 RPGRQ92834 1020 aaKnown RBP13.35□□□□□ -0.27
HDLBP-219ENST00000442714 NLRP3Q96P20 1036 aa13.35□□□□□ -0.27
HDLBP-219ENST00000442714 UTP14AQ9BVJ6 771 aaKnown RBP13.35□□□□□ -0.27
HDLBP-219ENST00000442714 TNRC6CQ9HCJ0 1690 aaKnown RBP13.34□□□□□ -0.27
HDLBP-219ENST00000442714 SNED1Q8TER0 1413 aa13.34□□□□□ -0.27
HDLBP-219ENST00000442714 HSPA1AP0DMV8 641 aaKnown RBP13.34□□□□□ -0.27
HDLBP-219ENST00000442714 HSPA1BP0DMV9 641 aaKnown RBP13.34□□□□□ -0.27
HDLBP-219ENST00000442714 COPS6Q7L5N1 327 aa13.34□□□□□ -0.27
HDLBP-219ENST00000442714 MKRN1Q9UHC7 482 aaKnown RBP13.34□□□□□ -0.27
HDLBP-219ENST00000442714 FER1L6Q2WGJ9 1857 aa13.33□□□□□ -0.27
HDLBP-219ENST00000442714 IBTKQ9P2D0 1353 aaPredicted RBP13.33□□□□□ -0.27
HDLBP-219ENST00000442714 BBOX1O75936 387 aa13.33□□□□□ -0.28
HDLBP-219ENST00000442714 ANXA1P04083 346 aa13.33□□□□□ -0.28
HDLBP-219ENST00000442714 DDX10Q13206 875 aaKnown RBP13.33□□□□□ -0.28
HDLBP-219ENST00000442714 EAPPQ56P03 285 aaPredicted RBP13.33□□□□□ -0.28
HDLBP-219ENST00000442714 SLC51AQ86UW1 340 aa13.33□□□□□ -0.28
HDLBP-219ENST00000442714 CNTROBQ8N137 903 aa13.33□□□□□ -0.28
HDLBP-219ENST00000442714 TRIM35Q9UPQ4 493 aa13.33□□□□□ -0.28
HDLBP-219ENST00000442714 CLEC11AQ9Y240 323 aa13.33□□□□□ -0.28
HDLBP-219ENST00000442714 TMEM88BA6NKF7 163 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 TCERG1O14776 1098 aaKnown RBP13.32□□□□□ -0.28
HDLBP-219ENST00000442714 LMOD3Q0VAK6 560 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 TCIRG1Q13488 830 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 NLRP10Q86W26 655 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 XAGE3Q8WTP9 111 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 VPS33BQ9H267 617 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 ATP6V0A2Q9Y487 856 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 COL11A2P13942 1736 aaPredicted RBP13.32□□□□□ -0.28
HDLBP-219ENST00000442714 RNF123Q5XPI4 1314 aa13.32□□□□□ -0.28
HDLBP-219ENST00000442714 RIC1Q4ADV7 1423 aa13.31□□□□□ -0.28
HDLBP-219ENST00000442714 PPEF1O14829 653 aaPredicted RBP13.31□□□□□ -0.28
HDLBP-219ENST00000442714 EPS15P42566 896 aa13.31□□□□□ -0.28
HDLBP-219ENST00000442714 VEGFBP49765 207 aa13.31□□□□□ -0.28
HDLBP-219ENST00000442714 EIF6P56537 245 aaKnown RBP13.31□□□□□ -0.28
HDLBP-219ENST00000442714 NEUROD2Q15784 382 aa13.31□□□□□ -0.28
HDLBP-219ENST00000442714 MAP1SQ66K74 1059 aaPredicted RBP13.31□□□□□ -0.28
HDLBP-219ENST00000442714 TNS4Q8IZW8 715 aa13.31□□□□□ -0.28
HDLBP-219ENST00000442714 LARGE2Q8N3Y3 721 aa13.31□□□□□ -0.28
HDLBP-219ENST00000442714 RTFDC1Q9BY42 306 aaPredicted RBP13.31□□□□□ -0.28
HDLBP-219ENST00000442714 DDX21Q9NR30 783 aaKnown RBP eCLIP13.31□□□□□ -0.28
HDLBP-219ENST00000442714 HCLS1P14317 486 aaPredicted RBP13.3□□□□□ -0.28
HDLBP-219ENST00000442714 AIMP1Q12904 312 aaKnown RBP13.3□□□□□ -0.28
HDLBP-219ENST00000442714 KRT24Q2M2I5 525 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 SP8Q8IXZ3 490 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 CCDC146Q8IYE0 955 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 NECTIN2Q92692 538 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 RUNDC1Q96C34 613 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 ADAMTS8Q9UP79 889 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 GJA3Q9Y6H8 435 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 CNTNAP1P78357 1384 aa13.3□□□□□ -0.28
HDLBP-219ENST00000442714 SCNN1DP51172 638 aa13.29□□□□□ -0.28
HDLBP-219ENST00000442714 HSP90AB3PQ58FF7 597 aa13.29□□□□□ -0.28
HDLBP-219ENST00000442714 TRMT112Q9UI30 125 aaKnown RBP13.29□□□□□ -0.28
HDLBP-219ENST00000442714 BCORQ6W2J9 1755 aa13.29□□□□□ -0.28
HDLBP-219ENST00000442714 CCDC88AQ3V6T2 1871 aa13.29□□□□□ -0.28
HDLBP-219ENST00000442714 CXCL9Q07325 125 aa13.28□□□□□ -0.28
HDLBP-219ENST00000442714 DEFB115Q30KQ5 88 aa13.28□□□□□ -0.28
HDLBP-219ENST00000442714 ANKRD13DQ6ZTN6 518 aa13.28□□□□□ -0.28
HDLBP-219ENST00000442714 TMX4Q9H1E5 349 aaPredicted RBP13.28□□□□□ -0.28
HDLBP-219ENST00000442714 ZNRF3Q9ULT6 936 aa13.28□□□□□ -0.28
HDLBP-219ENST00000442714 ABCC4O15439 1325 aa13.28□□□□□ -0.28
HDLBP-219ENST00000442714 MYBBP1AQ9BQG0 1328 aaKnown RBP13.28□□□□□ -0.28
HDLBP-219ENST00000442714 RASSF10A6NK89 507 aa13.27□□□□□ -0.29
HDLBP-219ENST00000442714 USP50Q70EL3 339 aaPredicted RBP13.27□□□□□ -0.29
HDLBP-219ENST00000442714 NIM1KQ8IY84 436 aa13.27□□□□□ -0.29
HDLBP-219ENST00000442714 WBP1LQ9NX94 342 aa13.27□□□□□ -0.29
HDLBP-219ENST00000442714 LAS1LQ9Y4W2 734 aaKnown RBP13.27□□□□□ -0.29
HDLBP-219ENST00000442714 DICER1Q9UPY3 1922 aaKnown RBP13.27□□□□□ -0.29
HDLBP-219ENST00000442714 FOXN1O15353 648 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 PPIP5K2O43314 1243 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 HOXB7P09629 217 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 LMOD1P29536 600 aaPredicted RBP13.26□□□□□ -0.29
HDLBP-219ENST00000442714 TRIM28Q13263 835 aaKnown RBP13.26□□□□□ -0.29
HDLBP-219ENST00000442714 AOC3Q16853 763 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 CST9Q5W186 159 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 DDX46Q7L014 1031 aaKnown RBP13.26□□□□□ -0.29
HDLBP-219ENST00000442714 MPNDQ8N594 471 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 SUPT20HQ8NEM7 779 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 PLBD2Q8NHP8 589 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 SH3TC1Q8TE82 1336 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 CFAP44Q96MT7 982 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 ISCA1Q9BUE6 129 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 CHPF2Q9P2E5 772 aa13.26□□□□□ -0.29
HDLBP-219ENST00000442714 TIAM2Q8IVF5 1701 aa13.25□□□□□ -0.29
HDLBP-219ENST00000442714 ZNF853P0CG23 659 aa13.25□□□□□ -0.29
HDLBP-219ENST00000442714 FMR1Q06787 632 aaKnown RBP eCLIP13.25□□□□□ -0.291e-8■■■■□ 19.7
HDLBP-219ENST00000442714 KIAA2012Q0VF49 1180 aa13.25□□□□□ -0.29
HDLBP-219ENST00000442714 GRAPQ13588 217 aa13.25□□□□□ -0.29
HDLBP-219ENST00000442714 SF3B3Q15393 1217 aaKnown RBP13.25□□□□□ -0.29
HDLBP-219ENST00000442714 DPP8Q6V1X1 898 aaPredicted RBP13.25□□□□□ -0.29
HDLBP-219ENST00000442714 GRAPLQ8TC17 118 aaPredicted RBP13.25□□□□□ -0.29
HDLBP-219ENST00000442714 GPRC5DQ9NZD1 345 aa13.25□□□□□ -0.29
HDLBP-219ENST00000442714 DBF4Q9UBU7 674 aaPredicted RBP13.25□□□□□ -0.29
HDLBP-219ENST00000442714 PGAP2Q9UHJ9 254 aa13.25□□□□□ -0.29
HDLBP-219ENST00000442714 COL4A5P29400 1685 aa13.24□□□□□ -0.29
HDLBP-219ENST00000442714 CAPN15O75808 1086 aa13.24□□□□□ -0.29
HDLBP-219ENST00000442714 WDR43Q15061 677 aaKnown RBP eCLIP13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms