RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 SUSD4Q5VX71 490 aa15.89■□□□□ 0.13
USP40-205ENST00000430158 PRR5LQ6MZQ0 368 aa15.89■□□□□ 0.13
USP40-205ENST00000430158 NLRP10Q86W26 655 aa15.89■□□□□ 0.13
USP40-205ENST00000430158 SPDYE1Q8NFV5 336 aaPredicted RBP15.89■□□□□ 0.13
USP40-205ENST00000430158 YTHDC1Q96MU7 727 aaKnown RBP15.89■□□□□ 0.13
USP40-205ENST00000430158 MAP3K2Q9Y2U5 619 aa15.89■□□□□ 0.13
USP40-205ENST00000430158 IBTKQ9P2D0 1353 aaPredicted RBP15.88■□□□□ 0.13
USP40-205ENST00000430158 BCAR3O75815 825 aa15.88■□□□□ 0.13
USP40-205ENST00000430158 NTSR2O95665 410 aa15.88■□□□□ 0.13
USP40-205ENST00000430158 DDX58O95786 925 aaKnown RBP15.88■□□□□ 0.13
USP40-205ENST00000430158 IGKV5-2P06315 115 aa15.88■□□□□ 0.13
USP40-205ENST00000430158 HSP90AB3PQ58FF7 597 aa15.88■□□□□ 0.13
USP40-205ENST00000430158 RIC3Q7Z5B4 369 aa15.88■□□□□ 0.13
USP40-205ENST00000430158 FHDC1Q9C0D6 1143 aaPredicted RBP15.88■□□□□ 0.13
USP40-205ENST00000430158 SSUH2Q9Y2M2 353 aa15.88■□□□□ 0.13
USP40-205ENST00000430158 FKBP5Q13451 457 aaPredicted RBP15.87■□□□□ 0.13
USP40-205ENST00000430158 PARP10Q53GL7 1025 aa15.87■□□□□ 0.13
USP40-205ENST00000430158 SMC4Q9NTJ3 1288 aa15.87■□□□□ 0.13
USP40-205ENST00000430158 CD2APQ9Y5K6 639 aa15.87■□□□□ 0.13
USP40-205ENST00000430158 C19orf67A6NJJ6 358 aa15.86■□□□□ 0.13
USP40-205ENST00000430158 F6X3S4 739 aa15.86■□□□□ 0.13
USP40-205ENST00000430158 ATP5J2-PTCD1G3V325 749 aa15.86■□□□□ 0.13
USP40-205ENST00000430158 DNAAF4Q8WXU2 420 aa15.86■□□□□ 0.13
USP40-205ENST00000430158 SYT17Q9BSW7 474 aa15.86■□□□□ 0.13
USP40-205ENST00000430158 PTPRCP08575 1304 aa15.86■□□□□ 0.13
USP40-205ENST00000430158 BEND3Q5T5X7 828 aa15.85■□□□□ 0.13
USP40-205ENST00000430158 NBPF5PQ86XG9 351 aaPredicted RBP15.85■□□□□ 0.13
USP40-205ENST00000430158 MYD88Q99836 296 aa15.85■□□□□ 0.13
USP40-205ENST00000430158 NOB1Q9ULX3 412 aaKnown RBP15.85■□□□□ 0.13
USP40-205ENST00000430158 CLEC11AQ9Y240 323 aa15.85■□□□□ 0.13
USP40-205ENST00000430158 ABCC12Q96J65 1359 aa15.85■□□□□ 0.13
USP40-205ENST00000430158 BRCA1P38398 1863 aaKnown RBP15.84■□□□□ 0.13
USP40-205ENST00000430158 KLRG2A4D1S0 409 aaPredicted RBP15.84■□□□□ 0.13
USP40-205ENST00000430158 NEURL1BA8MQ27 555 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 SLC10A5Q5PT55 438 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 TPTE2Q6XPS3 522 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 SYNE4Q8N205 404 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 CCDC24Q8N4L8 307 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 CCDC191Q8NCU4 936 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 NLGN2Q8NFZ4 835 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 ARHGAP45Q92619 1136 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 N4BP2Q86UW6 1770 aaPredicted RBP15.84■□□□□ 0.13
USP40-205ENST00000430158 PXDNLA1KZ92 1463 aa15.84■□□□□ 0.13
USP40-205ENST00000430158 KCNA3P22001 575 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 ERFEQ4G0M1 354 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 NUTM1Q86Y26 1132 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 CNBD1Q8NA66 436 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 LINS1Q8NG48 757 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 UTP14AQ9BVJ6 771 aaKnown RBP15.83■□□□□ 0.12
USP40-205ENST00000430158 BRIP1Q9BX63 1249 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 PPP1R1BQ9UD71 204 aaPredicted RBP15.83■□□□□ 0.12
USP40-205ENST00000430158 RIC1Q4ADV7 1423 aa15.83■□□□□ 0.12
USP40-205ENST00000430158 TNRC6CQ9HCJ0 1690 aaKnown RBP15.83■□□□□ 0.12
USP40-205ENST00000430158 FAM177BA6PVY3 158 aa15.82■□□□□ 0.12
USP40-205ENST00000430158 CWF19L2Q2TBE0 894 aaKnown RBP15.82■□□□□ 0.12
USP40-205ENST00000430158 PPP1R42Q7Z4L9 355 aa15.82■□□□□ 0.12
USP40-205ENST00000430158 NYXQ9GZU5 481 aa15.82■□□□□ 0.12
USP40-205ENST00000430158 RNF123Q5XPI4 1314 aa15.82■□□□□ 0.12
USP40-205ENST00000430158 COL11A2P13942 1736 aaPredicted RBP15.82■□□□□ 0.12
USP40-205ENST00000430158 DDX60Q8IY21 1712 aaKnown RBP15.82■□□□□ 0.12
USP40-205ENST00000430158 DLEC1Q9Y238 1755 aa15.82■□□□□ 0.12
USP40-205ENST00000430158 CASP7P55210 303 aa15.81■□□□□ 0.12
USP40-205ENST00000430158 LAMB2P55268 1798 aa15.81■□□□□ 0.12
USP40-205ENST00000430158 TGFB2P61812 414 aa15.81■□□□□ 0.12
USP40-205ENST00000430158 GCKRQ14397 625 aa15.81■□□□□ 0.12
USP40-205ENST00000430158 C3orf67Q6ZVT6 689 aa15.81■□□□□ 0.12
USP40-205ENST00000430158 TNNQ9UQP3 1299 aa15.81■□□□□ 0.12
USP40-205ENST00000430158 KIF16BQ96L93 1317 aa15.8■□□□□ 0.12
USP40-205ENST00000430158 H7C1W4 665 aa15.8■□□□□ 0.12
USP40-205ENST00000430158 PCCAP05165 728 aaPredicted RBP15.8■□□□□ 0.12
USP40-205ENST00000430158 DPEP1P16444 411 aa15.8■□□□□ 0.12
USP40-205ENST00000430158 ZBTB38Q8NAP3 1195 aaPredicted RBP15.8■□□□□ 0.12
USP40-205ENST00000430158 FAM89AQ96GI7 184 aa15.8■□□□□ 0.12
USP40-205ENST00000430158 CWC25Q9NXE8 425 aaPredicted RBP15.8■□□□□ 0.12
USP40-205ENST00000430158 TRMT112Q9UI30 125 aaKnown RBP15.8■□□□□ 0.12
USP40-205ENST00000430158 RCAN3Q9UKA8 241 aa15.8■□□□□ 0.12
USP40-205ENST00000430158 ABCC4O15439 1325 aa15.79■□□□□ 0.12
USP40-205ENST00000430158 SH3TC1Q8TE82 1336 aa15.79■□□□□ 0.12
USP40-205ENST00000430158 A0A0G2JLW4 131 aa15.79■□□□□ 0.12
USP40-205ENST00000430158 TRIM27P14373 513 aa15.79■□□□□ 0.12
USP40-205ENST00000430158 NEXNQ0ZGT2 675 aa15.79■□□□□ 0.12
USP40-205ENST00000430158 CRY2Q49AN0 593 aa15.79■□□□□ 0.12
USP40-205ENST00000430158 ALDH1L1O75891 902 aa15.78■□□□□ 0.12
USP40-205ENST00000430158 CHRNA5P30532 468 aa15.78■□□□□ 0.12
USP40-205ENST00000430158 ST5P78524 1137 aa15.78■□□□□ 0.12
USP40-205ENST00000430158 ATF7IPQ6VMQ6 1270 aa15.78■□□□□ 0.12
USP40-205ENST00000430158 API5Q9BZZ5 524 aaKnown RBP15.78■□□□□ 0.12
USP40-205ENST00000430158 UTYO14607 1347 aa15.77■□□□□ 0.12
USP40-205ENST00000430158 CDHR2Q9BYE9 1310 aa15.77■□□□□ 0.12
USP40-205ENST00000430158 GOLGB1Q14789 3259 aaKnown RBP15.77■□□□□ 0.12
USP40-205ENST00000430158 SRGNP10124 158 aa15.77■□□□□ 0.12
USP40-205ENST00000430158 HCLS1P14317 486 aaPredicted RBP15.77■□□□□ 0.12
USP40-205ENST00000430158 PDE6BP35913 854 aa15.77■□□□□ 0.12
USP40-205ENST00000430158 JARID2Q92833 1246 aaPredicted RBP15.77■□□□□ 0.12
USP40-205ENST00000430158 SRCIN1Q9C0H9 1055 aa15.77■□□□□ 0.12
USP40-205ENST00000430158 IPO8O15397 1037 aaKnown RBP15.76■□□□□ 0.11
USP40-205ENST00000430158 INTS3Q68E01 1043 aaKnown RBP15.76■□□□□ 0.11
USP40-205ENST00000430158 SLC4A10Q6U841 1118 aa15.76■□□□□ 0.11
USP40-205ENST00000430158 C2CD5Q86YS7 1000 aa15.76■□□□□ 0.11
USP40-205ENST00000430158 KLHL34Q8N239 644 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms