RNA–Protein interactions for RNA: ENST00000427943.1

PSPC1-202, Transcript of paraspeckle component 1, humanhuman

TSL 5

Gene PSPC1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSPC1-202ENST00000427943 HOXB7P09629 217 aa23.94■■□□□ 1.42
PSPC1-202ENST00000427943 ZNF853P0CG23 659 aa23.94■■□□□ 1.42
PSPC1-202ENST00000427943 DUSP27Q5VZP5 1158 aa23.94■■□□□ 1.42
PSPC1-202ENST00000427943 RPGRQ92834 1020 aaKnown RBP23.93■■□□□ 1.42
PSPC1-202ENST00000427943 IFT57Q9NWB7 429 aa23.93■■□□□ 1.42
PSPC1-202ENST00000427943 DDX60Q8IY21 1712 aaKnown RBP23.93■■□□□ 1.42
PSPC1-202ENST00000427943 ALDH1B1P30837 517 aa23.92■■□□□ 1.42
PSPC1-202ENST00000427943 C3orf67Q6ZVT6 689 aa23.92■■□□□ 1.42
PSPC1-202ENST00000427943 GNAI1P63096 354 aa23.91■■□□□ 1.42
PSPC1-202ENST00000427943 CALD1Q05682 793 aaKnown RBP23.91■■□□□ 1.42
PSPC1-202ENST00000427943 RBM46Q8TBY0 533 aaKnown RBP23.91■■□□□ 1.42
PSPC1-202ENST00000427943 UTP14AQ9BVJ6 771 aaKnown RBP23.91■■□□□ 1.42
PSPC1-202ENST00000427943 TAF1P21675 1872 aa23.91■■□□□ 1.42
PSPC1-202ENST00000427943 ANP32CO43423 234 aa23.9■■□□□ 1.42
PSPC1-202ENST00000427943 FKBP4Q02790 459 aaKnown RBP eCLIP23.9■■□□□ 1.42
PSPC1-202ENST00000427943 HSP90AB3PQ58FF7 597 aa23.9■■□□□ 1.42
PSPC1-202ENST00000427943 ZNF428Q96B54 188 aa23.9■■□□□ 1.42
PSPC1-202ENST00000427943 DBF4Q9UBU7 674 aaPredicted RBP23.9■■□□□ 1.42
PSPC1-202ENST00000427943 SLC51AQ86UW1 340 aa23.89■■□□□ 1.41
PSPC1-202ENST00000427943 NLRP10Q86W26 655 aa23.89■■□□□ 1.41
PSPC1-202ENST00000427943 MRS2Q9HD23 443 aa23.89■■□□□ 1.41
PSPC1-202ENST00000427943 SNED1Q8TER0 1413 aa23.89■■□□□ 1.41
PSPC1-202ENST00000427943 ELL2O00472 640 aaPredicted RBP23.88■■□□□ 1.41
PSPC1-202ENST00000427943 TCIRG1Q13488 830 aa23.88■■□□□ 1.41
PSPC1-202ENST00000427943 DPY19L2Q6NUT2 758 aa23.88■■□□□ 1.41
PSPC1-202ENST00000427943 ZNF277Q9NRM2 450 aaPredicted RBP23.88■■□□□ 1.41
PSPC1-202ENST00000427943 HOXA10P31260 410 aaPredicted RBP23.87■■□□□ 1.41
PSPC1-202ENST00000427943 RBM17Q96I25 401 aaKnown RBP23.87■■□□□ 1.41
PSPC1-202ENST00000427943 VEGFAP15692 232 aaPredicted RBP23.86■■□□□ 1.41
PSPC1-202ENST00000427943 RTKN2Q8IZC4 609 aa23.86■■□□□ 1.41
PSPC1-202ENST00000427943 SYNE4Q8N205 404 aa23.86■■□□□ 1.41
PSPC1-202ENST00000427943 PLBD2Q8NHP8 589 aa23.86■■□□□ 1.41
PSPC1-202ENST00000427943 NLRP3Q96P20 1036 aa23.86■■□□□ 1.41
PSPC1-202ENST00000427943 HYPKQ9NX55 129 aa23.86■■□□□ 1.41
PSPC1-202ENST00000427943 RNF123Q5XPI4 1314 aa23.85■■□□□ 1.41
PSPC1-202ENST00000427943 TCERG1O14776 1098 aaKnown RBP23.85■■□□□ 1.41
PSPC1-202ENST00000427943 CRAMP1Q96RY5 1269 aa23.85■■□□□ 1.41
PSPC1-202ENST00000427943 TRMT112Q9UI30 125 aaKnown RBP23.85■■□□□ 1.41
PSPC1-202ENST00000427943 POTECB2RU33 542 aa23.84■■□□□ 1.41
PSPC1-202ENST00000427943 PPEF1O14829 653 aaPredicted RBP23.84■■□□□ 1.41
PSPC1-202ENST00000427943 DDNO94850 711 aaPredicted RBP23.84■■□□□ 1.41
PSPC1-202ENST00000427943 HCLS1P14317 486 aaPredicted RBP23.84■■□□□ 1.41
PSPC1-202ENST00000427943 SLC10A5Q5PT55 438 aa23.84■■□□□ 1.41
PSPC1-202ENST00000427943 ANKRD13DQ6ZTN6 518 aa23.84■■□□□ 1.41
PSPC1-202ENST00000427943 C8orf58Q8NAV2 365 aa23.84■■□□□ 1.41
PSPC1-202ENST00000427943 SCN4AP35499 1836 aa23.84■■□□□ 1.41
PSPC1-202ENST00000427943 FSTL1Q12841 308 aa23.83■■□□□ 1.41
PSPC1-202ENST00000427943 TSR2Q969E8 191 aaKnown RBP23.83■■□□□ 1.41
PSPC1-202ENST00000427943 SH3TC1Q8TE82 1336 aa23.83■■□□□ 1.4
PSPC1-202ENST00000427943 COL4A5P29400 1685 aa23.83■■□□□ 1.4
PSPC1-202ENST00000427943 ATP5J2-PTCD1G3V325 749 aa23.82■■□□□ 1.4
PSPC1-202ENST00000427943 IARSP41252 1262 aaKnown RBP23.82■■□□□ 1.4
PSPC1-202ENST00000427943 APLP1P51693 650 aa23.82■■□□□ 1.4
PSPC1-202ENST00000427943 PHAXQ9H814 394 aaKnown RBP23.82■■□□□ 1.4
PSPC1-202ENST00000427943 ABCC4O15439 1325 aa23.82■■□□□ 1.4
PSPC1-202ENST00000427943 ZNF541Q9H0D2 1346 aa23.82■■□□□ 1.4
PSPC1-202ENST00000427943 SMC1BQ8NDV3 1235 aa23.81■■□□□ 1.4
PSPC1-202ENST00000427943 PSMD1Q99460 953 aa23.81■■□□□ 1.4
PSPC1-202ENST00000427943 CCDC27Q2M243 656 aa23.8■■□□□ 1.4
PSPC1-202ENST00000427943 CC2D2BQ6DHV5 1058 aa23.8■■□□□ 1.4
PSPC1-202ENST00000427943 WWC1Q8IX03 1113 aa23.8■■□□□ 1.4
PSPC1-202ENST00000427943 TSPYL6Q8N831 410 aa23.8■■□□□ 1.4
PSPC1-202ENST00000427943 ISCA1Q9BUE6 129 aa23.8■■□□□ 1.4
PSPC1-202ENST00000427943 LRRC37AA6NMS7 1700 aa23.79■■□□□ 1.4
PSPC1-202ENST00000427943 GOLGA2Q08379 1002 aa23.79■■□□□ 1.4
PSPC1-202ENST00000427943 RIC3Q7Z5B4 369 aa23.78■■□□□ 1.4
PSPC1-202ENST00000427943 COL4A1P02462 1669 aa23.77■■□□□ 1.4
PSPC1-202ENST00000427943 HTRA3P83110 453 aa23.77■■□□□ 1.4
PSPC1-202ENST00000427943 RTL5Q5HYW3 569 aaPredicted RBP23.77■■□□□ 1.4
PSPC1-202ENST00000427943 FAM89AQ96GI7 184 aa23.77■■□□□ 1.4
PSPC1-202ENST00000427943 SALL2Q9Y467 1007 aaPredicted RBP23.77■■□□□ 1.4
PSPC1-202ENST00000427943 CCDC30Q5VVM6 783 aa23.76■■□□□ 1.39
PSPC1-202ENST00000427943 DDX46Q7L014 1031 aaKnown RBP23.75■■□□□ 1.39
PSPC1-202ENST00000427943 ATP6V0A2Q9Y487 856 aa23.75■■□□□ 1.39
PSPC1-202ENST00000427943 FZD9O00144 591 aa23.74■■□□□ 1.39
PSPC1-202ENST00000427943 POTEIP0CG38 1075 aa23.74■■□□□ 1.39
PSPC1-202ENST00000427943 POTEJP0CG39 1038 aa23.74■■□□□ 1.39
PSPC1-202ENST00000427943 JDP2Q8WYK2 163 aa23.74■■□□□ 1.39
PSPC1-202ENST00000427943 MYD88Q99836 296 aa23.74■■□□□ 1.39
PSPC1-202ENST00000427943 CACNA1FO60840 1977 aa23.73■■□□□ 1.39
PSPC1-202ENST00000427943 GRAPQ13588 217 aa23.73■■□□□ 1.39
PSPC1-202ENST00000427943 GRIPAP1Q4V328 841 aa23.73■■□□□ 1.39
PSPC1-202ENST00000427943 LARGE2Q8N3Y3 721 aa23.73■■□□□ 1.39
PSPC1-202ENST00000427943 GRAPLQ8TC17 118 aaPredicted RBP23.73■■□□□ 1.39
PSPC1-202ENST00000427943 L3MBTL3Q96JM7 780 aaPredicted RBP23.73■■□□□ 1.39
PSPC1-202ENST00000427943 TMX4Q9H1E5 349 aaPredicted RBP23.73■■□□□ 1.39
PSPC1-202ENST00000427943 IL16Q14005 1332 aa23.72■■□□□ 1.39
PSPC1-202ENST00000427943 DUOX1Q9NRD9 1551 aa23.72■■□□□ 1.39
PSPC1-202ENST00000427943 LTBP1Q14766 1721 aa23.72■■□□□ 1.39
PSPC1-202ENST00000427943 MYH3P11055 1940 aa23.72■■□□□ 1.39
PSPC1-202ENST00000427943 ADAMTSL1Q8N6G6 1762 aa23.71■■□□□ 1.39
PSPC1-202ENST00000427943 IQCA1LA6NCM1 817 aa23.71■■□□□ 1.39
PSPC1-202ENST00000427943 TRIM28Q13263 835 aaKnown RBP23.71■■□□□ 1.39
PSPC1-202ENST00000427943 AOC3Q16853 763 aa23.71■■□□□ 1.39
PSPC1-202ENST00000427943 TWISTNBQ3B726 338 aaPredicted RBP23.71■■□□□ 1.39
PSPC1-202ENST00000427943 FAM9BQ8IZU0 186 aa23.71■■□□□ 1.39
PSPC1-202ENST00000427943 FANCIQ9NVI1 1328 aa23.7■■□□□ 1.38
PSPC1-202ENST00000427943 IRS4O14654 1257 aaPredicted RBP23.7■■□□□ 1.38
PSPC1-202ENST00000427943 PPIP5K2O43314 1243 aa23.7■■□□□ 1.38
PSPC1-202ENST00000427943 BBOX1O75936 387 aa23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms