RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 PLCH1Q4KWH8 1693 aa16.08■□□□□ 0.17
USP42-203ENST00000426246 TOGARAM1Q9Y4F4 1720 aa16.08■□□□□ 0.16
USP42-203ENST00000426246 UBR2Q8IWV8 1755 aa16.08■□□□□ 0.16
USP42-203ENST00000426246 DNAJC2Q99543 621 aaKnown RBP16.08■□□□□ 0.16
USP42-203ENST00000426246 WNK3Q9BYP7 1800 aa16.08■□□□□ 0.16
USP42-203ENST00000426246 PTMSP20962 102 aa16.08■□□□□ 0.16
USP42-203ENST00000426246 CKAP2LQ8IYA6 745 aa16.08■□□□□ 0.16
USP42-203ENST00000426246 PXDNLA1KZ92 1463 aa16.08■□□□□ 0.16
USP42-203ENST00000426246 CLASRPQ8N2M8 674 aaKnown RBP16.07■□□□□ 0.16
USP42-203ENST00000426246 RHPN1Q8TCX5 695 aa16.07■□□□□ 0.16
USP42-203ENST00000426246 SLC52A2Q9HAB3 445 aa16.07■□□□□ 0.16
USP42-203ENST00000426246 KIAA2012Q0VF49 1180 aa16.07■□□□□ 0.16
USP42-203ENST00000426246 LARP1Q6PKG0 1096 aaKnown RBP16.07■□□□□ 0.16
USP42-203ENST00000426246 CARD10Q9BWT7 1032 aa16.07■□□□□ 0.16
USP42-203ENST00000426246 USP44Q9H0E7 712 aa16.07■□□□□ 0.16
USP42-203ENST00000426246 CWC22Q9HCG8 908 aaKnown RBP16.07■□□□□ 0.16
USP42-203ENST00000426246 RASEFQ8IZ41 740 aa16.06■□□□□ 0.16
USP42-203ENST00000426246 STK11IPQ8N1F8 1099 aa16.06■□□□□ 0.16
USP42-203ENST00000426246 FSD1Q9BTV5 496 aa16.06■□□□□ 0.16
USP42-203ENST00000426246 NRAPQ86VF7 1730 aa16.06■□□□□ 0.16
USP42-203ENST00000426246 GIGYF1O75420 1035 aaPredicted RBP16.06■□□□□ 0.16
USP42-203ENST00000426246 IFNL2Q8IZJ0 200 aa16.06■□□□□ 0.16
USP42-203ENST00000426246 RIC3Q7Z5B4 369 aa16.06■□□□□ 0.16
USP42-203ENST00000426246 SYAP1Q96A49 352 aaPredicted RBP16.05■□□□□ 0.16
USP42-203ENST00000426246 AK2P54819 239 aa16.05■□□□□ 0.16
USP42-203ENST00000426246 DNM1Q05193 864 aaKnown RBP16.05■□□□□ 0.16
USP42-203ENST00000426246 CNTROBQ8N137 903 aa16.05■□□□□ 0.16
USP42-203ENST00000426246 NEUROD6Q96NK8 337 aa16.05■□□□□ 0.16
USP42-203ENST00000426246 ATP8B2P98198 1209 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 ZNF592Q92610 1267 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 DCAF5Q96JK2 942 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 TOM1L2Q6ZVM7 507 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 RAB11FIP4Q86YS3 637 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 MAP3K2Q9Y2U5 619 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 ATP5J2-PTCD1G3V325 749 aa16.04■□□□□ 0.16
USP42-203ENST00000426246 PTCD1O75127 700 aaKnown RBP16.04■□□□□ 0.16
USP42-203ENST00000426246 DISP2A7MBM2 1401 aa16.03■□□□□ 0.16
USP42-203ENST00000426246 LAMB4A4D0S4 1761 aa16.03■□□□□ 0.16
USP42-203ENST00000426246 G3BP1Q13283 466 aaKnown RBP eCLIP16.03■□□□□ 0.16
USP42-203ENST00000426246 NFATC2IPQ8NCF5 419 aa16.03■□□□□ 0.16
USP42-203ENST00000426246 GUCY1B3Q02153 619 aa16.03■□□□□ 0.16
USP42-203ENST00000426246 DDIT3P35638 169 aa16.02■□□□□ 0.16
USP42-203ENST00000426246 PROSER3Q2NL68 480 aa16.02■□□□□ 0.16
USP42-203ENST00000426246 ZNF790Q6PG37 636 aa16.02■□□□□ 0.16
USP42-203ENST00000426246 NKX1-1Q15270 411 aaPredicted RBP16.02■□□□□ 0.16
USP42-203ENST00000426246 DNAAF4Q8WXU2 420 aa16.02■□□□□ 0.16
USP42-203ENST00000426246 CHGBP05060 677 aa16.02■□□□□ 0.15
USP42-203ENST00000426246 GJB2P29033 226 aa16.02■□□□□ 0.15
USP42-203ENST00000426246 LRSAM1Q6UWE0 723 aa16.02■□□□□ 0.15
USP42-203ENST00000426246 BICD2Q8TD16 824 aa16.02■□□□□ 0.15
USP42-203ENST00000426246 FAM227BQ96M60 508 aa16.02■□□□□ 0.15
USP42-203ENST00000426246 ZMYND15Q9H091 742 aa16.02■□□□□ 0.15
USP42-203ENST00000426246 LARGE1O95461 756 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 ADCK5Q3MIX3 580 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 PDRG1Q9NUG6 133 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 NPHP1O15259 732 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 ZKSCAN1P17029 563 aaPredicted RBP16.01■□□□□ 0.15
USP42-203ENST00000426246 LARP1BQ659C4 914 aaKnown RBP16.01■□□□□ 0.15
USP42-203ENST00000426246 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.01■□□□□ 0.15
USP42-203ENST00000426246 PTH1RQ03431 593 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 PDIA6Q15084 440 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 PCDH11XQ9BZA7 1347 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 PCDH11YQ9BZA8 1340 aa16.01■□□□□ 0.15
USP42-203ENST00000426246 ADCY9O60503 1353 aa16■□□□□ 0.15
USP42-203ENST00000426246 A0A087WWV3 80 aa16■□□□□ 0.15
USP42-203ENST00000426246 IL2RBP14784 551 aa16■□□□□ 0.15
USP42-203ENST00000426246 BTG4Q9NY30 223 aa16■□□□□ 0.15
USP42-203ENST00000426246 KCPQ6ZWJ8 1503 aa16■□□□□ 0.15
USP42-203ENST00000426246 UBE2Q2Q8WVN8 375 aa16■□□□□ 0.15
USP42-203ENST00000426246 MBD3O95983 291 aa16■□□□□ 0.15
USP42-203ENST00000426246 SYT1P21579 422 aa16■□□□□ 0.15
USP42-203ENST00000426246 ZCRB1Q8TBF4 217 aaKnown RBP16■□□□□ 0.15
USP42-203ENST00000426246 STRN4Q9NRL3 753 aa16■□□□□ 0.15
USP42-203ENST00000426246 KAT6BQ8WYB5 2073 aa16■□□□□ 0.15
USP42-203ENST00000426246 RAB11FIP3O75154 756 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 ADCY5O95622 1261 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 WDR33Q9C0J8 1336 aaKnown RBP15.99■□□□□ 0.15
USP42-203ENST00000426246 STX6O43752 255 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 CHST3Q7LGC8 479 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 ZBTB9Q96C00 473 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 IGSF3O75054 1194 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 ERCC4Q92889 916 aaPredicted RBP15.99■□□□□ 0.15
USP42-203ENST00000426246 KIF1BPQ96EK5 621 aa15.99■□□□□ 0.15
USP42-203ENST00000426246 SLFNL1Q499Z3 407 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 FMNL2Q96PY5 1086 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 ITGB4P16144 1822 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 H3BQV1 296 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 IFFO2Q5TF58 517 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 LRP10Q7Z4F1 713 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 ZNF496Q96IT1 587 aaPredicted RBP15.98■□□□□ 0.15
USP42-203ENST00000426246 SNX14Q9Y5W7 946 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 CYP46A1Q9Y6A2 500 aa15.98■□□□□ 0.15
USP42-203ENST00000426246 CCDC129Q6ZRS4 1044 aa15.97■□□□□ 0.15
USP42-203ENST00000426246 GPATCH3Q96I76 525 aa15.97■□□□□ 0.15
USP42-203ENST00000426246 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.97■□□□□ 0.15
USP42-203ENST00000426246 DBF4Q9UBU7 674 aaPredicted RBP15.97■□□□□ 0.15
USP42-203ENST00000426246 TNS2Q63HR2 1409 aa15.97■□□□□ 0.15
USP42-203ENST00000426246 COL9A3Q14050 684 aaPredicted RBP15.96■□□□□ 0.15
USP42-203ENST00000426246 CCDC39Q9UFE4 941 aa15.96■□□□□ 0.15
USP42-203ENST00000426246 NWD2Q9ULI1 1742 aa15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms