RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 TRIM68Q6AZZ1 485 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SNCBQ16143 134 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 RINLQ6ZS11 566 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SNUPNO95149 360 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 FAM76AQ8TAV0 307 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 UPF3BQ9BZI7 483 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ANKRD50Q9ULJ7 1429 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 PDE3AQ14432 1141 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SRLQ86TD4 932 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SYCP3Q8IZU3 236 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 PRXQ9BXM0 1461 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CREB3O43889 395 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 DZIP1LQ8IYY4 767 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ARHGAP5Q13017 1502 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SLFN5Q08AF3 891 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 HINFPQ9BQA5 517 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 C9orf84Q5VXU9 1444 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ZKSCAN2Q63HK3 967 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CEP112Q8N8E3 955 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TBC1D31Q96DN5 1066 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ZNF396Q96N95 335 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 PARD6BQ9BYG5 372 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6L7A0A1B0GV03 622 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CDKL5O76039 1030 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 KARSQ15046 597 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 AKNAD1Q5T1N1 836 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 UNC13AQ9UPW8 1703 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ADGBQ8N7X0 1667 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 GOLGA6L10A0A0M3HER8 536 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 HDGFL2Q7Z4V5 671 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SRGAP3O43295 1099 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CACTINQ8WUQ7 758 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 LMBR1Q8WVP7 490 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 EXOC4Q96A65 974 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 NCOA1Q15788 1441 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 PYGLP06737 847 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 MIPOL1Q8TD10 442 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 MTRQ99707 1265 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TNNQ9UQP3 1299 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ZSCAN12O43309 604 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 GCFC2P16383 781 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TYRO3Q06418 890 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 MAP7D1Q3KQU3 841 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CAPRIN2Q6IMN6 1127 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 RBM33Q96EV2 1170 aaKnown RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 MYO1FO00160 1098 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 MX1P20591 662 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 SFPQP23246 707 aaKnown RBP eCLIP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ANO6Q4KMQ2 910 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 KIF3BO15066 747 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TXLNAP40222 546 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC92Q53HC0 331 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ABTB1Q969K4 478 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 USP27XA6NNY8 438 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 C3orf20Q8ND61 904 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 FAM169AQ9Y6X4 670 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 PDLIM2Q96JY6 352 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 CEP89Q96ST8 783 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 ZNF692Q9BU19 519 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TRIML1Q8N9V2 468 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 TMX3Q96JJ7 454 aa3.93□□□□□ -1.78
SYNE1-212ENST00000423061 MYBL2P10244 700 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 HSPA4P34932 840 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 OLFML1Q6UWY5 402 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 GET4Q7L5D6 327 aaPredicted RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CABS1Q96KC9 395 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 ST20-MTHFSA0A0A6YYL1 179 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CCDC50Q8IVM0 306 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 DDX54Q8TDD1 881 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 RBM26Q5T8P6 1007 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 ZC3H6P61129 1189 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 FERMT3Q86UX7 667 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 POTEDQ86YR6 584 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 LRRN4CLQ8ND94 238 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 N4BP1O75113 896 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 ZNF165P49910 485 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CBX8Q9HC52 389 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 RYDENQ9NUL5 291 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 AATFQ9NY61 560 aaKnown RBP eCLIP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CADPSQ9ULU8 1353 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 POLE2P56282 527 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 RPS6KA3P51812 740 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 MUM1L1Q5H9M0 696 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CLTAP09496 248 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 LRRC31Q6UY01 552 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 FNBP4Q8N3X1 1017 aaPredicted RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 FAM167BQ9BTA0 163 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CAMSAP2Q08AD1 1489 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 ERC2O15083 957 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 LGR5O75473 907 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 MIEF2Q96C03 454 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 PHACTR1Q9C0D0 580 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 IFT88Q13099 833 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 TAX1BP1Q86VP1 789 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 ARHGEF12Q9NZN5 1544 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 CC2D2BQ6DHV5 1058 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 WDR33Q9C0J8 1336 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 GIGYF2Q6Y7W6 1299 aaKnown RBP3.92□□□□□ -1.78
SYNE1-212ENST00000423061 NEMFO60524 1076 aa3.92□□□□□ -1.78
SYNE1-212ENST00000423061 AMOTQ4VCS5 1084 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms