RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 RTKN2Q8IZC4 609 aa15.19■□□□□ 0.02
USP4-204ENST00000416417 RPGRQ92834 1020 aaKnown RBP15.19■□□□□ 0.02
USP4-204ENST00000416417 EAPPQ56P03 285 aaPredicted RBP15.17■□□□□ 0.02
USP4-204ENST00000416417 COPS6Q7L5N1 327 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 XAGE3Q8WTP9 111 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 TAF1DQ9H5J8 278 aaPredicted RBP15.17■□□□□ 0.02
USP4-204ENST00000416417 ADAMTS8Q9UP79 889 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 TRIM35Q9UPQ4 493 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 ERBB4Q15303 1308 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 COL4A5P29400 1685 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 SNED1Q8TER0 1413 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 LMOD3Q0VAK6 560 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 WDR43Q15061 677 aaKnown RBP eCLIP15.17■□□□□ 0.02
USP4-204ENST00000416417 RNF123Q5XPI4 1314 aa15.17■□□□□ 0.02
USP4-204ENST00000416417 PPEF1O14829 653 aaPredicted RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 HOXA10P31260 410 aaPredicted RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 COL13A1Q5TAT6 717 aaPredicted RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 PPP1R42Q7Z4L9 355 aa15.16■□□□□ 0.02
USP4-204ENST00000416417 RUNDC1Q96C34 613 aa15.16■□□□□ 0.02
USP4-204ENST00000416417 RBM17Q96I25 401 aaKnown RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 L3MBTL3Q96JM7 780 aaPredicted RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 UTP14AQ9BVJ6 771 aaKnown RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 MKRN1Q9UHC7 482 aaKnown RBP15.16■□□□□ 0.02
USP4-204ENST00000416417 GJA3Q9Y6H8 435 aa15.16■□□□□ 0.02
USP4-204ENST00000416417 IQCA1LA6NCM1 817 aa15.15■□□□□ 0.02
USP4-204ENST00000416417 FZD9O00144 591 aa15.15■□□□□ 0.02
USP4-204ENST00000416417 HCLS1P14317 486 aaPredicted RBP15.15■□□□□ 0.02
USP4-204ENST00000416417 CLEC11AQ9Y240 323 aa15.15■□□□□ 0.02
USP4-204ENST00000416417 IBTKQ9P2D0 1353 aaPredicted RBP15.15■□□□□ 0.02
USP4-204ENST00000416417 CHL1O00533 1208 aa15.14■□□□□ 0.01
USP4-204ENST00000416417 PARP10Q53GL7 1025 aa15.14■□□□□ 0.01
USP4-204ENST00000416417 CRAMP1Q96RY5 1269 aa15.14■□□□□ 0.01
USP4-204ENST00000416417 PSMD1Q99460 953 aa15.14■□□□□ 0.01
USP4-204ENST00000416417 CHPF2Q9P2E5 772 aa15.14■□□□□ 0.01
USP4-204ENST00000416417 HACL1Q9UJ83 578 aa15.14■□□□□ 0.01
USP4-204ENST00000416417 RIC1Q4ADV7 1423 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 EPHX2P34913 555 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 NLRP10Q86W26 655 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 LDHDQ86WU2 507 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 NLRP3Q96P20 1036 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 BABAM1Q9NWV8 329 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 PCNTO95613 3336 aa15.13■□□□□ 0.01
USP4-204ENST00000416417 ABCC4O15439 1325 aa15.12■□□□□ 0.01
USP4-204ENST00000416417 HSPA1AP0DMV8 641 aaKnown RBP15.12■□□□□ 0.01
USP4-204ENST00000416417 HSPA1BP0DMV9 641 aaKnown RBP15.12■□□□□ 0.01
USP4-204ENST00000416417 LARGE2Q8N3Y3 721 aa15.12■□□□□ 0.01
USP4-204ENST00000416417 JDP2Q8WYK2 163 aa15.12■□□□□ 0.01
USP4-204ENST00000416417 AOC3Q16853 763 aa15.12■□□□□ 0.01
USP4-204ENST00000416417 HDGFL1Q5TGJ6 251 aa15.12■□□□□ 0.01
USP4-204ENST00000416417 MAP1SQ66K74 1059 aaPredicted RBP15.12■□□□□ 0.01
USP4-204ENST00000416417 DDX21Q9NR30 783 aaKnown RBP eCLIP15.12■□□□□ 0.01
USP4-204ENST00000416417 TRMT112Q9UI30 125 aaKnown RBP15.12■□□□□ 0.01
USP4-204ENST00000416417 PASKQ96RG2 1323 aa15.11■□□□□ 0.01
USP4-204ENST00000416417 TCIRG1Q13488 830 aa15.11■□□□□ 0.01
USP4-204ENST00000416417 SLC10A5Q5PT55 438 aa15.11■□□□□ 0.01
USP4-204ENST00000416417 CC2D2BQ6DHV5 1058 aa15.11■□□□□ 0.01
USP4-204ENST00000416417 GPC2Q8N158 579 aa15.11■□□□□ 0.01
USP4-204ENST00000416417 CREBZFQ9NS37 354 aa15.11■□□□□ 0.01
USP4-204ENST00000416417 ATP5J2-PTCD1G3V325 749 aa15.1■□□□□ 0.01
USP4-204ENST00000416417 ITGBL1O95965 494 aaPredicted RBP15.1■□□□□ 0.01
USP4-204ENST00000416417 EIF6P56537 245 aaKnown RBP15.1■□□□□ 0.01
USP4-204ENST00000416417 FMR1Q06787 632 aaKnown RBP eCLIP15.1■□□□□ 0.01
USP4-204ENST00000416417 PRKRIP1Q9H875 184 aaPredicted RBP15.1■□□□□ 0.01
USP4-204ENST00000416417 SCN4AP35499 1836 aa15.1■□□□□ 0.01
USP4-204ENST00000416417 PPIP5K2O43314 1243 aa15.09■□□□□ 0.01
USP4-204ENST00000416417 EPS15P42566 896 aa15.09■□□□□ 0.01
USP4-204ENST00000416417 RTL5Q5HYW3 569 aaPredicted RBP15.09■□□□□ 0.01
USP4-204ENST00000416417 MBIPQ9NS73 344 aa15.09■□□□□ 0.01
USP4-204ENST00000416417 ATP6V0A2Q9Y487 856 aa15.09■□□□□ 0.01
USP4-204ENST00000416417 LTBP1Q14766 1721 aa15.09■□□□□ 0.01
USP4-204ENST00000416417 ELL2O00472 640 aaPredicted RBP15.08■□□□□ 0.01
USP4-204ENST00000416417 APAF1O14727 1248 aa15.08■□□□□ 0.01
USP4-204ENST00000416417 CAPN15O75808 1086 aa15.08■□□□□ 0.01
USP4-204ENST00000416417 HSP90AB3PQ58FF7 597 aa15.08■□□□□ 0.01
USP4-204ENST00000416417 DUSP27Q5VZP5 1158 aa15.08■□□□□ 0.01
USP4-204ENST00000416417 NIM1KQ8IY84 436 aa15.08■□□□□ 0.01
USP4-204ENST00000416417 LAMB2P55268 1798 aa15.08■□□□□ 0
USP4-204ENST00000416417 ANKRD36CQ5JPF3 1778 aa15.08■□□□□ 0
USP4-204ENST00000416417 SCNN1DP51172 638 aa15.07■□□□□ 0
USP4-204ENST00000416417 CNTROBQ8N137 903 aa15.07■□□□□ 0
USP4-204ENST00000416417 ADAMTSL1Q8N6G6 1762 aa15.07■□□□□ 0
USP4-204ENST00000416417 SH3TC1Q8TE82 1336 aa15.07■□□□□ 0
USP4-204ENST00000416417 ANKRD13DQ6ZTN6 518 aa15.07■□□□□ 0
USP4-204ENST00000416417 PLBD2Q8NHP8 589 aa15.07■□□□□ 0
USP4-204ENST00000416417 FAM89AQ96GI7 184 aa15.07■□□□□ 0
USP4-204ENST00000416417 CFAP44Q96MT7 982 aa15.07■□□□□ 0
USP4-204ENST00000416417 TAF1P21675 1872 aa15.06■□□□□ 0
USP4-204ENST00000416417 TMEM88BA6NKF7 163 aa15.06■□□□□ 0
USP4-204ENST00000416417 LMOD1P29536 600 aaPredicted RBP15.06■□□□□ 0
USP4-204ENST00000416417 VEGFBP49765 207 aa15.06■□□□□ 0
USP4-204ENST00000416417 DPP8Q6V1X1 898 aaPredicted RBP15.06■□□□□ 0
USP4-204ENST00000416417 DDX46Q7L014 1031 aaKnown RBP15.06■□□□□ 0
USP4-204ENST00000416417 PNMA8AQ86V59 439 aaPredicted RBP15.06■□□□□ 0
USP4-204ENST00000416417 TMX4Q9H1E5 349 aaPredicted RBP15.06■□□□□ 0
USP4-204ENST00000416417 DBF4Q9UBU7 674 aaPredicted RBP15.06■□□□□ 0
USP4-204ENST00000416417 CNTNAP1P78357 1384 aa15.06■□□□□ 0
USP4-204ENST00000416417 COL4A1P02462 1669 aa15.05■□□□□ -0
USP4-204ENST00000416417 CXCL9Q07325 125 aa15.05■□□□□ -0
USP4-204ENST00000416417 GRAPQ13588 217 aa15.05■□□□□ -0
USP4-204ENST00000416417 CCDC184Q52MB2 194 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms