RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PPP1R12CQ9BZL4 782 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 C1orf115Q9H7X2 142 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 KANK3Q6NY19 840 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 NBPF11Q86T75 865 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 SPAG5Q96R06 1193 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 TRIM35Q9UPQ4 493 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 CCDC7Q96M83 1385 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 HVCN1Q96D96 273 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 ANKRD24Q8TF21 1146 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 PDZRN3Q9UPQ7 1066 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 CCDC89Q8N998 374 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 CTAGE1Q96RT6 745 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 CTAGE15A4D2H0 777 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 CTAGE8P0CG41 777 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 CTAGE4Q8IX94 777 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 GOLGA1Q92805 767 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 ADCY5O95622 1261 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 GAS2L2Q8NHY3 880 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 SCAPERQ9BY12 1400 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 MAP3K7CLP57077 242 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 GKAP1Q5VSY0 366 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 ZSWIM4Q9H7M6 989 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 CCDC62Q6P9F0 684 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 FAM76AQ8TAV0 307 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 SH2B1Q9NRF2 756 aaPredicted RBP15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 GSDMBQ8TAX9 411 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 BICD1Q96G01 975 aa15.19■□□□□ 0.02
CCDC88A-204ENST00000413716 CUX2O14529 1486 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 AEBP2Q6ZN18 517 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 RUFY3Q7L099 469 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 NLRP2Q9NX02 1062 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 VPS18Q9P253 973 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 NAA16Q6N069 864 aaPredicted RBP15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 TCP11L1Q9NUJ3 509 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 FCHSD2O94868 740 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 PDCD7Q8N8D1 485 aaKnown RBP15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 CUL4BQ13620 913 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 CARMIL1Q5VZK9 1371 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 INPP1P49441 399 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 CALCOCO2Q13137 446 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 EXOC1Q9NV70 894 aa15.18■□□□□ 0.02
CCDC88A-204ENST00000413716 HSPA1LP34931 641 aa15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 LMBR1Q8WVP7 490 aa15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 LRRC27Q9C0I9 530 aa15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 MPHOSPH6Q99547 160 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 CYLC1P35663 651 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 CCDC194A0A1B0GVG4 234 aa15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 CETN3O15182 167 aa15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 SDCCAG8Q86SQ7 713 aaPredicted RBP15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 CA8P35219 290 aa15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 NOB1Q9ULX3 412 aaKnown RBP15.17■□□□□ 0.02
CCDC88A-204ENST00000413716 ATP6V1E1P36543 226 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 SSRP1Q08945 709 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 ARHGAP24Q8N264 748 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 KCNK9Q9NPC2 374 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 RMND1Q9NWS8 449 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 CTCFLQ8NI51 663 aaPredicted RBP15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 XAB2Q9HCS7 855 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 STX6O43752 255 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 MCUR1Q96AQ8 359 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 DDX19AQ9NUU7 478 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 CHD1LQ86WJ1 897 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 POTEDQ86YR6 584 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 NKIRAS1Q9NYS0 192 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 MTRF1LQ9UGC7 380 aaKnown RBP15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 ATF3P18847 181 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 SLC12A7Q9Y666 1083 aa15.16■□□□□ 0.02
CCDC88A-204ENST00000413716 CCDC38Q502W7 563 aa15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 TSGA10Q9BZW7 698 aa15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 CRACR2BQ8N4Y2 399 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 MAK16Q9BXY0 300 aaKnown RBP15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 FAM169AQ9Y6X4 670 aa15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 BRD4O60885 1362 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 MYCNP04198 464 aaPredicted RBP15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 GBP5Q96PP8 586 aa15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 AKR1B10O60218 316 aa15.15■□□□□ 0.02
CCDC88A-204ENST00000413716 CKAP2LQ8IYA6 745 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 HAUS7Q99871 368 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 PPP1R7Q15435 360 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 USP25Q9UHP3 1055 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 CLUL1Q15846 466 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 DNAJC8O75937 253 aaPredicted RBP15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 WDR78Q5VTH9 848 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 ARFGAP2Q8N6H7 521 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 MKNK2Q9HBH9 465 aa15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 TBCAO75347 108 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 EEF2P13639 858 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 GPR161Q8N6U8 529 aaKnown RBP15.14■□□□□ 0.01
CCDC88A-204ENST00000413716 PDE3AQ14432 1141 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 RNF216Q9NWF9 866 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 FSIP1Q8NA03 581 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 ARHGEF2Q92974 986 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 SAMM50Q9Y512 469 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 RPGRIP1LQ68CZ1 1315 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 SMIM23A6NLE4 172 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 CATIPQ7Z7H3 387 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 MSANTD4Q8NCY6 345 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 PLCD3Q8N3E9 789 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 CCDC82Q8N4S0 544 aa15.13■□□□□ 0.01
CCDC88A-204ENST00000413716 GIPC1O14908 333 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms