RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 ESCO1Q5FWF5 840 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ZNF444Q8N0Y2 327 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 FSIP1Q8NA03 581 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CABP1Q9NZU7 370 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 HDAC9Q9UKV0 1011 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 BICDL2A1A5D9 508 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 BAG3O95817 575 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 IARSP41252 1262 aaKnown RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 MTIF2P46199 727 aaKnown RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ZNF165P49910 485 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 FKBP4Q02790 459 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC50Q8IVM0 306 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 MSANTD4Q8NCY6 345 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 SSBP05455 408 aaKnown RBP eCLIP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 ARID4AP29374 1257 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 KIAA0753Q2KHM9 967 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC94Q9BW85 323 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-203ENST00000409050 IKBKGQ9Y6K9 419 aa6.99□□□□□ -1.29
SCN1A-203ENST00000409050 USP5P45974 858 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 IFIT5Q13325 482 aaKnown RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 CDC5LQ99459 802 aaKnown RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 KIF14Q15058 1648 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 GNAT2P19087 354 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 CERS3Q8IU89 383 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 TNPO1Q92973 898 aaKnown RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 TSR2Q969E8 191 aaKnown RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 MKNK2Q9HBH9 465 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 PABPN1LA6NDY0 278 aaKnown RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 CALML3P27482 149 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 SLC12A5Q9H2X9 1139 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 BABAM1Q9NWV8 329 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 TTC41PQ6P2S7 1318 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 CC2D2AQ9P2K1 1620 aa6.98□□□□□ -1.29
SCN1A-203ENST00000409050 MAP4K4O95819 1239 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 PRPF40BQ6NWY9 871 aaKnown RBP6.98□□□□□ -1.29
SCN1A-203ENST00000409050 KRT86O43790 486 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 ZSCAN22P10073 491 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC40Q4G0X9 1142 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 TDRD12Q587J7 1177 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 BICDL1Q6ZP65 573 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 TOM1L2Q6ZVM7 507 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 NAP1L3Q99457 506 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 HOMER2Q9NSB8 354 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 ZNF644Q9H582 1327 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 SLU7O95391 586 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 UBA7P41226 1012 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 NLRP5P59047 1200 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 TTC22Q5TAA0 569 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 CCDC129Q6ZRS4 1044 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 BRAPQ7Z569 592 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 GOLGA1Q92805 767 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 RPRD2Q5VT52 1461 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 ABCA10Q8WWZ4 1543 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 PSMA7O14818 248 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 POLR3DP05423 398 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 CTNNA2P26232 953 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 CNGA1P29973 690 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 DAAM2Q86T65 1068 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 RTL9Q8NET4 1388 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 ATP2A2P16615 1042 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 SF3B2Q13435 895 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 RBM26Q5T8P6 1007 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 TMEM132EQ6IEE7 984 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 NEK1Q96PY6 1258 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 GLT8D2Q9H1C3 349 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 FAM114A2Q9NRY5 505 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 SWAP70Q9UH65 585 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 EIF2AK4Q9P2K8 1649 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 C11orf95C9JLR9 678 aaPredicted RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 IDH1O75874 414 aaKnown RBP6.97□□□□□ -1.29
SCN1A-203ENST00000409050 ADCY5O95622 1261 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 MATR3P43243 847 aaKnown RBP eCLIP6.97□□□□□ -1.291e-10■■■■■ 37.8
SCN1A-203ENST00000409050 NBPF8Q3BBV2 869 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 VWA3BQ502W6 1294 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 TBC1D2Q9BYX2 928 aa6.97□□□□□ -1.29
SCN1A-203ENST00000409050 MAGI1Q96QZ7 1491 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-203ENST00000409050 GIGYF1O75420 1035 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-203ENST00000409050 SKIDA1Q1XH10 827 aa6.96□□□□□ -1.29
SCN1A-203ENST00000409050 FAM177A1Q8N128 213 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-203ENST00000409050 GABPB2Q8TAK5 448 aaPredicted RBP6.96□□□□□ -1.29
SCN1A-203ENST00000409050 MRPS27Q92552 414 aaKnown RBP6.96□□□□□ -1.29
SCN1A-203ENST00000409050 NUDT16Q96DE0 195 aaKnown RBP6.96□□□□□ -1.29
SCN1A-203ENST00000409050 CSRNP2Q9H175 543 aa6.96□□□□□ -1.29
SCN1A-203ENST00000409050 NPHP3Q7Z494 1330 aa6.96□□□□□ -1.29
SCN1A-203ENST00000409050 HLTFQ14527 1009 aaKnown RBP eCLIP6.96□□□□□ -1.36e-7■■■■□ 22.5
SCN1A-203ENST00000409050 RNF187Q5TA31 235 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-203ENST00000409050 APBB1IPQ7Z5R6 666 aaPredicted RBP6.96□□□□□ -1.3
SCN1A-203ENST00000409050 C1orf115Q9H7X2 142 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 EXOC1Q9NV70 894 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 ZKSCAN5Q9Y2L8 839 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 AOX1Q06278 1338 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 IFIT3O14879 490 aaKnown RBP6.96□□□□□ -1.3
SCN1A-203ENST00000409050 HLA-DOAP06340 250 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 B4GALNT4Q76KP1 1039 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 FBF1Q8TES7 1133 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 SMC6Q96SB8 1091 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 TOPBP1Q92547 1522 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 IQGAP2Q13576 1575 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 SETSIPP0DME0 302 aa6.96□□□□□ -1.3
SCN1A-203ENST00000409050 SSR1P43307 286 aaKnown RBP6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 185.6 ms