RNA–Protein interactions for RNA: ENST00000399903.6

PTPRA-205, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 5 BASIC

Gene PTPRA, Length 3,337 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-205ENST00000399903 GTF3C6Q969F1 213 aa20.24■□□□□ 0.83
PTPRA-205ENST00000399903 ZSCAN25Q6NSZ9 544 aa20.23■□□□□ 0.83
PTPRA-205ENST00000399903 CERS3Q8IU89 383 aa20.23■□□□□ 0.83
PTPRA-205ENST00000399903 XRN1Q8IZH2 1706 aaKnown RBP20.23■□□□□ 0.83
PTPRA-205ENST00000399903 RASEFQ8IZ41 740 aa20.23■□□□□ 0.83
PTPRA-205ENST00000399903 CBX8Q9HC52 389 aa20.23■□□□□ 0.83
PTPRA-205ENST00000399903 DACT1Q9NYF0 836 aa20.23■□□□□ 0.83
PTPRA-205ENST00000399903 PNMA6EA0A0J9YXQ4 647 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 ANAPC15P60006 121 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 KMT5BQ4FZB7 885 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 DNAJC25Q9H1X3 360 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 LIMCH1Q9UPQ0 1083 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 KIAA0232Q92628 1395 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 KRT28Q7Z3Y7 464 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 CACTINQ8WUQ7 758 aaKnown RBP20.22■□□□□ 0.83
PTPRA-205ENST00000399903 MAP3K5Q99683 1374 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 PRAMEF22A3QJZ6 481 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 GNAI2P04899 355 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 RUFY3Q7L099 469 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 BICD2Q8TD16 824 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 ZBTB9Q96C00 473 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 FUCA2Q9BTY2 467 aa20.22■□□□□ 0.83
PTPRA-205ENST00000399903 USP27XA6NNY8 438 aa20.21■□□□□ 0.83
PTPRA-205ENST00000399903 GORABQ5T7V8 394 aa20.21■□□□□ 0.83
PTPRA-205ENST00000399903 ANKARQ7Z5J8 1434 aa20.21■□□□□ 0.83
PTPRA-205ENST00000399903 NALCNQ8IZF0 1738 aa20.21■□□□□ 0.83
PTPRA-205ENST00000399903 MRVI1Q9Y6F6 885 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 HAP1P54257 671 aaPredicted RBP20.2■□□□□ 0.82
PTPRA-205ENST00000399903 CEBPZQ03701 1054 aaKnown RBP20.2■□□□□ 0.82
PTPRA-205ENST00000399903 CCDC30Q5VVM6 783 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 TCEANC2Q96MN5 208 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 TRIM34Q9BYJ4 488 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 PTPRCP08575 1304 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 PTPN14Q15678 1187 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 LARP1BQ659C4 914 aaKnown RBP20.2■□□□□ 0.82
PTPRA-205ENST00000399903 ANKRD24Q8TF21 1146 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 SNX14Q9Y5W7 946 aa20.2■□□□□ 0.82
PTPRA-205ENST00000399903 TEFQ10587 303 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 CHRNA2Q15822 529 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 JAKMIP1Q96N16 626 aaKnown RBP20.19■□□□□ 0.82
PTPRA-205ENST00000399903 NPHP4O75161 1426 aaPredicted RBP20.19■□□□□ 0.82
PTPRA-205ENST00000399903 ZNF165P49910 485 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 PAXBP1Q9Y5B6 917 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 A0A087WWV3 80 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 POLR3GO15318 223 aaPredicted RBP20.19■□□□□ 0.82
PTPRA-205ENST00000399903 CCDC144BQ3MJ40 725 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 FBXO38Q6PIJ6 1188 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 CCDC144CPQ8IYA2 1237 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 TMEM87AQ8NBN3 555 aa20.19■□□□□ 0.82
PTPRA-205ENST00000399903 LRRFIP2Q9Y608 721 aaKnown RBP20.19■□□□□ 0.82
PTPRA-205ENST00000399903 RGPD1P0DJD0 1748 aa20.18■□□□□ 0.82
PTPRA-205ENST00000399903 GOLGA6L19H0YKK7 550 aa20.18■□□□□ 0.82
PTPRA-205ENST00000399903 FOSBP53539 338 aa20.18■□□□□ 0.82
PTPRA-205ENST00000399903 TTC6Q86TZ1 520 aa20.18■□□□□ 0.82
PTPRA-205ENST00000399903 ZNF397Q8NF99 534 aaPredicted RBP20.18■□□□□ 0.82
PTPRA-205ENST00000399903 CHPF2Q9P2E5 772 aa20.18■□□□□ 0.82
PTPRA-205ENST00000399903 ZNF75DP51815 510 aa20.18■□□□□ 0.82
PTPRA-205ENST00000399903 IPO4Q8TEX9 1081 aaKnown RBP20.17■□□□□ 0.82
PTPRA-205ENST00000399903 MTMR6Q9Y217 621 aa20.17■□□□□ 0.82
PTPRA-205ENST00000399903 KRT85P78386 507 aa20.17■□□□□ 0.82
PTPRA-205ENST00000399903 STK3Q13188 491 aa20.17■□□□□ 0.82
PTPRA-205ENST00000399903 MORC2Q9Y6X9 1032 aaPredicted RBP20.17■□□□□ 0.82
PTPRA-205ENST00000399903 HSPA4P34932 840 aa20.17■□□□□ 0.82
PTPRA-205ENST00000399903 ZFP91Q96JP5 570 aaPredicted RBP20.17■□□□□ 0.82
PTPRA-205ENST00000399903 PRPF40BQ6NWY9 871 aaKnown RBP20.16■□□□□ 0.82
PTPRA-205ENST00000399903 OSBPL3Q9H4L5 887 aa20.16■□□□□ 0.82
PTPRA-205ENST00000399903 NLRP2Q9NX02 1062 aa20.16■□□□□ 0.82
PTPRA-205ENST00000399903 ADGRL3Q9HAR2 1447 aa20.16■□□□□ 0.82
PTPRA-205ENST00000399903 BTBD11A6QL63 1104 aa20.16■□□□□ 0.82
PTPRA-205ENST00000399903 SURF6O75683 361 aaKnown RBP20.16■□□□□ 0.82
PTPRA-205ENST00000399903 TNNT3P45378 269 aaPredicted RBP20.16■□□□□ 0.82
PTPRA-205ENST00000399903 NOL10Q9BSC4 688 aaKnown RBP20.15■□□□□ 0.82
PTPRA-205ENST00000399903 PDRG1Q9NUG6 133 aa20.15■□□□□ 0.82
PTPRA-205ENST00000399903 USP16Q9Y5T5 823 aa20.15■□□□□ 0.82
PTPRA-205ENST00000399903 FMN2Q9NZ56 1722 aa20.15■□□□□ 0.82
PTPRA-205ENST00000399903 SKILP12757 684 aa20.15■□□□□ 0.82
PTPRA-205ENST00000399903 SLC39A6Q13433 755 aa20.15■□□□□ 0.82
PTPRA-205ENST00000399903 PDIA4P13667 645 aaKnown RBP20.14■□□□□ 0.82
PTPRA-205ENST00000399903 PIP4K2AP48426 406 aaPredicted RBP20.14■□□□□ 0.82
PTPRA-205ENST00000399903 ARHGEF25Q86VW2 580 aa20.14■□□□□ 0.82
PTPRA-205ENST00000399903 KCNH5Q8NCM2 988 aa20.14■□□□□ 0.82
PTPRA-205ENST00000399903 SPATA32Q96LK8 384 aa20.14■□□□□ 0.82
PTPRA-205ENST00000399903 CALCOCO1Q9P1Z2 691 aa20.14■□□□□ 0.82
PTPRA-205ENST00000399903 NWD1Q149M9 1564 aa20.14■□□□□ 0.81
PTPRA-205ENST00000399903 CCT4P50991 539 aaKnown RBP20.14■□□□□ 0.81
PTPRA-205ENST00000399903 OS9Q13438 667 aaPredicted RBP20.14■□□□□ 0.81
PTPRA-205ENST00000399903 CDC37L1Q7L3B6 337 aa20.14■□□□□ 0.81
PTPRA-205ENST00000399903 BECN2A8MW95 431 aa20.13■□□□□ 0.81
PTPRA-205ENST00000399903 AIMP1Q12904 312 aaKnown RBP20.13■□□□□ 0.81
PTPRA-205ENST00000399903 PI4KAP2A4QPH2 592 aa20.13■□□□□ 0.81
PTPRA-205ENST00000399903 CSB-PGBD3P0DP91 1061 aa20.13■□□□□ 0.81
PTPRA-205ENST00000399903 PROSER3Q2NL68 480 aa20.13■□□□□ 0.81
PTPRA-205ENST00000399903 C1orf141Q5JVX7 400 aa20.13■□□□□ 0.81
PTPRA-205ENST00000399903 PI4KAP1Q8N8J0 262 aa20.13■□□□□ 0.81
PTPRA-205ENST00000399903 RAD50Q92878 1312 aa20.12■□□□□ 0.81
PTPRA-205ENST00000399903 ERCC6LQ2NKX8 1250 aa20.12■□□□□ 0.81
PTPRA-205ENST00000399903 ADCK5Q3MIX3 580 aa20.12■□□□□ 0.81
PTPRA-205ENST00000399903 ATF3P18847 181 aa20.12■□□□□ 0.81
PTPRA-205ENST00000399903 EIF4A1P60842 406 aaKnown RBP20.12■□□□□ 0.81
PTPRA-205ENST00000399903 RBM6P78332 1123 aaKnown RBP20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms