RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 NCOA3Q9Y6Q9 1424 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 ARHGEF11O15085 1522 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 CYP2C19P33261 490 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 LRRFIP1Q32MZ4 808 aaKnown RBP10.77□□□□□ -0.69
COL28A1-201ENST00000399429 LEO1Q8WVC0 666 aaPredicted RBP10.77□□□□□ -0.69
COL28A1-201ENST00000399429 NPC1L1Q9UHC9 1359 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 HMGXB3Q12766 1538 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 ATP6V1AP38606 617 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 HDGFL1Q5TGJ6 251 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 MTMR6Q9Y217 621 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 DHX16O60231 1041 aaKnown RBP10.76□□□□□ -0.69
COL28A1-201ENST00000399429 ACTN2P35609 894 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 LIG3P49916 1009 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 ETF1P62495 437 aaKnown RBP10.76□□□□□ -0.69
COL28A1-201ENST00000399429 NEUROD6Q96NK8 337 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 WDHD1O75717 1129 aaPredicted RBP10.76□□□□□ -0.69
COL28A1-201ENST00000399429 ERLIN2O94905 339 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 AIMP1Q12904 312 aaKnown RBP10.76□□□□□ -0.69
COL28A1-201ENST00000399429 JMYQ8N9B5 988 aa10.76□□□□□ -0.69
COL28A1-201ENST00000399429 RBM8AQ9Y5S9 174 aaKnown RBP10.76□□□□□ -0.69
COL28A1-201ENST00000399429 CTAGE15A4D2H0 777 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CTAGE8P0CG41 777 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 RALYLQ86SE5 291 aaKnown RBP10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CTAGE6Q86UF2 777 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CTAGE4Q8IX94 777 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC148Q8NFR7 591 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 ABCA10Q8WWZ4 1543 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 TOPBP1Q92547 1522 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 GPATCH8Q9UKJ3 1502 aaKnown RBP10.75□□□□□ -0.69
COL28A1-201ENST00000399429 ATP2C2O75185 946 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 OTUD6BQ8N6M0 293 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 PDE11AQ9HCR9 933 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 A2MP01023 1474 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 A0A1B0GVL5 298 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 NFXL1Q6ZNB6 911 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 XPO4Q9C0E2 1151 aaKnown RBP10.75□□□□□ -0.69
COL28A1-201ENST00000399429 GCC2Q8IWJ2 1684 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC144BQ3MJ40 725 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 ODF2Q5BJF6 829 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 PPP1R42Q7Z4L9 355 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC144CPQ8IYA2 1237 aa10.75□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC8Q9H0W5 538 aaPredicted RBP10.75□□□□□ -0.69
COL28A1-201ENST00000399429 ZSCAN16Q9H4T2 348 aaPredicted RBP10.75□□□□□ -0.69
COL28A1-201ENST00000399429 ELP1O95163 1332 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 PTPRCP08575 1304 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 CHMP4BP1P59074 171 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 ST5P78524 1137 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 KRT32Q14532 448 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 MRPS27Q92552 414 aaKnown RBP10.74□□□□□ -0.69
COL28A1-201ENST00000399429 ADAM21Q9UKJ8 722 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 GBP2P32456 591 aaPredicted RBP10.74□□□□□ -0.69
COL28A1-201ENST00000399429 TRDNQ13061 729 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 VPS53Q5VIR6 699 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 RHPN1Q8TCX5 695 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 EPC1Q9H2F5 836 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC181Q5TID7 509 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 RUFY3Q7L099 469 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 ERC1Q8IUD2 1116 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 GPR161Q8N6U8 529 aaKnown RBP10.74□□□□□ -0.69
COL28A1-201ENST00000399429 CDK19Q9BWU1 502 aa10.74□□□□□ -0.69
COL28A1-201ENST00000399429 ZEB2O60315 1214 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 SSBP05455 408 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL28A1-201ENST00000399429 HSPA4P34932 840 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 WASHC4Q2M389 1173 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 TEX2Q8IWB9 1127 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 PPP1R13BQ96KQ4 1090 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 GDAP1L1Q96MZ0 367 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 PTPRGP23470 1445 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 EFCAB8A8MWE9 144 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 SAFBQ15424 915 aaKnown RBP eCLIP10.73□□□□□ -0.69
COL28A1-201ENST00000399429 ZNF569Q5MCW4 686 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 TDRD7Q8NHU6 1098 aaKnown RBP10.73□□□□□ -0.69
COL28A1-201ENST00000399429 MRFAP1L1Q96HT8 127 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 MAGI3Q5TCQ9 1506 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 GOLGA6L10A6NI86 522 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 FYB1O15117 783 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 INPP5BP32019 993 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 FLIIQ13045 1269 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 CEP112Q8N8E3 955 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 FBXO18Q8NFZ0 1043 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 AFAP1L1Q8TED9 768 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.73□□□□□ -0.69
COL28A1-201ENST00000399429 MKRN1Q9UHC7 482 aaKnown RBP10.73□□□□□ -0.69
COL28A1-201ENST00000399429 AK9Q5TCS8 1911 aa10.73□□□□□ -0.69
COL28A1-201ENST00000399429 ABCC2Q92887 1545 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 MBD5Q9P267 1494 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 MSH6P52701 1360 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 MATR3P43243 847 aaKnown RBP eCLIP10.72□□□□□ -0.69
COL28A1-201ENST00000399429 C8orf76Q96K31 380 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 BAG1Q99933 345 aaPredicted RBP10.72□□□□□ -0.69
COL28A1-201ENST00000399429 DACH1Q9UI36 760 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 ARHGAP5Q13017 1502 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC175P0C221 793 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 ME3Q16798 604 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 CCDC158Q5M9N0 1113 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 KIAA1328Q86T90 577 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 CNNM3Q8NE01 707 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 BRMS1Q9HCU9 246 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 ECHDC1Q9NTX5 307 aa10.72□□□□□ -0.69
COL28A1-201ENST00000399429 PLB1Q6P1J6 1458 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms