RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 MAPK8IP3Q9UPT6 1336 aa13.58□□□□□ -0.24
NEDD8-202ENST00000396828 SCN4AP35499 1836 aa13.57□□□□□ -0.24
NEDD8-202ENST00000396828 NTSR2O95665 410 aa13.57□□□□□ -0.24
NEDD8-202ENST00000396828 EIF2S2P20042 333 aaKnown RBP13.57□□□□□ -0.24
NEDD8-202ENST00000396828 IARSP41252 1262 aaKnown RBP13.57□□□□□ -0.24
NEDD8-202ENST00000396828 RTKN2Q8IZC4 609 aa13.57□□□□□ -0.24
NEDD8-202ENST00000396828 FZD9O00144 591 aa13.56□□□□□ -0.24
NEDD8-202ENST00000396828 TCERG1O14776 1098 aaKnown RBP13.56□□□□□ -0.24
NEDD8-202ENST00000396828 HOXA10P31260 410 aaPredicted RBP13.56□□□□□ -0.24
NEDD8-202ENST00000396828 TMPOP42166 694 aaKnown RBP13.56□□□□□ -0.24
NEDD8-202ENST00000396828 KRT24Q2M2I5 525 aa13.56□□□□□ -0.24
NEDD8-202ENST00000396828 GIGYF2Q6Y7W6 1299 aaKnown RBP13.56□□□□□ -0.24
NEDD8-202ENST00000396828 CCDC146Q8IYE0 955 aa13.56□□□□□ -0.24
NEDD8-202ENST00000396828 NECTIN2Q92692 538 aa13.56□□□□□ -0.24
NEDD8-202ENST00000396828 NYXQ9GZU5 481 aa13.56□□□□□ -0.24
NEDD8-202ENST00000396828 MKRN1Q9UHC7 482 aaKnown RBP13.56□□□□□ -0.24
NEDD8-202ENST00000396828 PASKQ96RG2 1323 aa13.56□□□□□ -0.24
NEDD8-202ENST00000396828 ADAMTSL1Q8N6G6 1762 aa13.55□□□□□ -0.24
NEDD8-202ENST00000396828 ITGBL1O95965 494 aaPredicted RBP13.55□□□□□ -0.24
NEDD8-202ENST00000396828 HSPA1AP0DMV8 641 aaKnown RBP13.55□□□□□ -0.24
NEDD8-202ENST00000396828 HSPA1BP0DMV9 641 aaKnown RBP13.55□□□□□ -0.24
NEDD8-202ENST00000396828 ZNF428Q96B54 188 aa13.55□□□□□ -0.24
NEDD8-202ENST00000396828 RNF123Q5XPI4 1314 aa13.55□□□□□ -0.24
NEDD8-202ENST00000396828 LTBP1Q14766 1721 aa13.55□□□□□ -0.24
NEDD8-202ENST00000396828 IQCA1LA6NCM1 817 aa13.54□□□□□ -0.24
NEDD8-202ENST00000396828 EAPPQ56P03 285 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-202ENST00000396828 LDHDQ86WU2 507 aa13.54□□□□□ -0.24
NEDD8-202ENST00000396828 RPGRQ92834 1020 aaKnown RBP13.54□□□□□ -0.24
NEDD8-202ENST00000396828 PSMD1Q99460 953 aa13.54□□□□□ -0.24
NEDD8-202ENST00000396828 PNNQ9H307 717 aaKnown RBP13.54□□□□□ -0.24
NEDD8-202ENST00000396828 CREBZFQ9NS37 354 aa13.54□□□□□ -0.24
NEDD8-202ENST00000396828 IBTKQ9P2D0 1353 aaPredicted RBP13.54□□□□□ -0.24
NEDD8-202ENST00000396828 RIC1Q4ADV7 1423 aa13.54□□□□□ -0.24
NEDD8-202ENST00000396828 EPHX2P34913 555 aa13.53□□□□□ -0.24
NEDD8-202ENST00000396828 NEUROD2Q15784 382 aa13.53□□□□□ -0.24
NEDD8-202ENST00000396828 HACL1Q9UJ83 578 aa13.53□□□□□ -0.24
NEDD8-202ENST00000396828 ERBB4Q15303 1308 aa13.53□□□□□ -0.24
NEDD8-202ENST00000396828 PPEF1O14829 653 aaPredicted RBP13.52□□□□□ -0.25
NEDD8-202ENST00000396828 AIMP1Q12904 312 aaKnown RBP13.52□□□□□ -0.25
NEDD8-202ENST00000396828 MAP1SQ66K74 1059 aaPredicted RBP13.52□□□□□ -0.25
NEDD8-202ENST00000396828 COPS6Q7L5N1 327 aa13.52□□□□□ -0.25
NEDD8-202ENST00000396828 CRAMP1Q96RY5 1269 aa13.52□□□□□ -0.25
NEDD8-202ENST00000396828 MRS2Q9HD23 443 aa13.52□□□□□ -0.25
NEDD8-202ENST00000396828 TRIM35Q9UPQ4 493 aa13.52□□□□□ -0.25
NEDD8-202ENST00000396828 CLEC11AQ9Y240 323 aa13.52□□□□□ -0.25
NEDD8-202ENST00000396828 LAMB2P55268 1798 aa13.52□□□□□ -0.25
NEDD8-202ENST00000396828 TAF1P21675 1872 aa13.51□□□□□ -0.25
NEDD8-202ENST00000396828 CAPN15O75808 1086 aa13.51□□□□□ -0.25
NEDD8-202ENST00000396828 FMR1Q06787 632 aaKnown RBP eCLIP13.51□□□□□ -0.25
NEDD8-202ENST00000396828 SLC10A5Q5PT55 438 aa13.51□□□□□ -0.25
NEDD8-202ENST00000396828 GPC2Q8N158 579 aa13.51□□□□□ -0.25
NEDD8-202ENST00000396828 XAGE3Q8WTP9 111 aa13.51□□□□□ -0.25
NEDD8-202ENST00000396828 RBM17Q96I25 401 aaKnown RBP13.51□□□□□ -0.25
NEDD8-202ENST00000396828 GJA3Q9Y6H8 435 aa13.51□□□□□ -0.25
NEDD8-202ENST00000396828 ANKRD36CQ5JPF3 1778 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 CNTNAP1P78357 1384 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 ABCC4O15439 1325 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 CHL1O00533 1208 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 HCLS1P14317 486 aaPredicted RBP13.5□□□□□ -0.25
NEDD8-202ENST00000396828 SCNN1DP51172 638 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 CC2D2BQ6DHV5 1058 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 PPP1R42Q7Z4L9 355 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 NLRP10Q86W26 655 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 JDP2Q8WYK2 163 aa13.5□□□□□ -0.25
NEDD8-202ENST00000396828 UTP14AQ9BVJ6 771 aaKnown RBP13.5□□□□□ -0.25
NEDD8-202ENST00000396828 EPS15P42566 896 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 VEGFBP49765 207 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 PARP10Q53GL7 1025 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 TNS4Q8IZW8 715 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 CNTROBQ8N137 903 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 LARGE2Q8N3Y3 721 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 NLRP3Q96P20 1036 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 BABAM1Q9NWV8 329 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 ADAMTS8Q9UP79 889 aa13.49□□□□□ -0.25
NEDD8-202ENST00000396828 LAS1LQ9Y4W2 734 aaKnown RBP13.49□□□□□ -0.25
NEDD8-202ENST00000396828 TMEM88BA6NKF7 163 aa13.48□□□□□ -0.25
NEDD8-202ENST00000396828 TCIRG1Q13488 830 aa13.48□□□□□ -0.25
NEDD8-202ENST00000396828 AOC3Q16853 763 aa13.48□□□□□ -0.25
NEDD8-202ENST00000396828 CHPF2Q9P2E5 772 aa13.48□□□□□ -0.25
NEDD8-202ENST00000396828 ATP6V0A2Q9Y487 856 aa13.48□□□□□ -0.25
NEDD8-202ENST00000396828 COL4A1P02462 1669 aa13.47□□□□□ -0.25
NEDD8-202ENST00000396828 FOXN1O15353 648 aa13.47□□□□□ -0.25
NEDD8-202ENST00000396828 EIF6P56537 245 aaKnown RBP13.47□□□□□ -0.25
NEDD8-202ENST00000396828 LMOD3Q0VAK6 560 aa13.47□□□□□ -0.25
NEDD8-202ENST00000396828 PNMA8AQ86V59 439 aaPredicted RBP13.47□□□□□ -0.25
NEDD8-202ENST00000396828 RUNDC1Q96C34 613 aa13.47□□□□□ -0.25
NEDD8-202ENST00000396828 DDX21Q9NR30 783 aaKnown RBP eCLIP13.47□□□□□ -0.25
NEDD8-202ENST00000396828 PPIP5K2O43314 1243 aa13.46□□□□□ -0.25
NEDD8-202ENST00000396828 CCDC184Q52MB2 194 aa13.46□□□□□ -0.25
NEDD8-202ENST00000396828 TRMT112Q9UI30 125 aaKnown RBP13.46□□□□□ -0.25
NEDD8-202ENST00000396828 DDX60Q8IY21 1712 aaKnown RBP13.45□□□□□ -0.26
NEDD8-202ENST00000396828 CXCL9Q07325 125 aa13.45□□□□□ -0.26
NEDD8-202ENST00000396828 ATP5J2-PTCD1G3V325 749 aa13.44□□□□□ -0.26
NEDD8-202ENST00000396828 TRAF5O00463 557 aa13.44□□□□□ -0.26
NEDD8-202ENST00000396828 GRIPAP1Q4V328 841 aa13.44□□□□□ -0.26
NEDD8-202ENST00000396828 HDGFL1Q5TGJ6 251 aa13.44□□□□□ -0.26
NEDD8-202ENST00000396828 SP8Q8IXZ3 490 aa13.44□□□□□ -0.26
NEDD8-202ENST00000396828 NIM1KQ8IY84 436 aa13.44□□□□□ -0.26
NEDD8-202ENST00000396828 RTFDC1Q9BY42 306 aaPredicted RBP13.44□□□□□ -0.26
NEDD8-202ENST00000396828 DUOX1Q9NRD9 1551 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms