RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 IMMTQ16891 758 aaKnown RBP16.21■□□□□ 0.19
COL6A1-201ENST00000361866 CCDC70Q6NSX1 233 aa16.21■□□□□ 0.19
COL6A1-201ENST00000361866 PBRM1Q86U86 1689 aa16.21■□□□□ 0.19
COL6A1-201ENST00000361866 PRDM15P57071 1507 aaPredicted RBP16.21■□□□□ 0.19
COL6A1-201ENST00000361866 GOLGA8BA8MQT2 603 aa16.21■□□□□ 0.18
COL6A1-201ENST00000361866 CTAGE5O15320 804 aa16.21■□□□□ 0.18
COL6A1-201ENST00000361866 FILIP1LQ4L180 1135 aa16.21■□□□□ 0.18
COL6A1-201ENST00000361866 BCL2L12Q9HB09 334 aa16.21■□□□□ 0.18
COL6A1-201ENST00000361866 ORC3Q9UBD5 711 aaPredicted RBP16.2■□□□□ 0.18
COL6A1-201ENST00000361866 DNAI1Q9UI46 699 aa16.2■□□□□ 0.18
COL6A1-201ENST00000361866 USP16Q9Y5T5 823 aa16.2■□□□□ 0.18
COL6A1-201ENST00000361866 YTHDC2Q9H6S0 1430 aaKnown RBP16.2■□□□□ 0.18
COL6A1-201ENST00000361866 CCDC69A6NI79 296 aa16.2■□□□□ 0.18
COL6A1-201ENST00000361866 RUFY3Q7L099 469 aa16.2■□□□□ 0.18
COL6A1-201ENST00000361866 VPS53Q5VIR6 699 aa16.2■□□□□ 0.18
COL6A1-201ENST00000361866 LEKR1Q6ZMV7 388 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 CDC37L1Q7L3B6 337 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 ABCC1P33527 1531 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 KIF2AO00139 706 aaPredicted RBP16.19■□□□□ 0.18
COL6A1-201ENST00000361866 CBFA2T2O43439 604 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 SART3Q15020 963 aaKnown RBP16.19■□□□□ 0.18
COL6A1-201ENST00000361866 CCDC102AQ96A19 550 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 KIF2CQ99661 725 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 CTNNA3Q9UI47 895 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 TARBP1Q13395 1621 aaKnown RBP16.19■□□□□ 0.18
COL6A1-201ENST00000361866 HSPA4P34932 840 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 AXDND1Q5T1B0 1012 aaPredicted RBP16.19■□□□□ 0.18
COL6A1-201ENST00000361866 RASEFQ8IZ41 740 aa16.19■□□□□ 0.18
COL6A1-201ENST00000361866 MARCKSP29966 332 aaPredicted RBP16.18■□□□□ 0.18
COL6A1-201ENST00000361866 TERF1P54274 439 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 KRT222Q8N1A0 295 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 LRRC59Q96AG4 307 aaKnown RBP16.18■□□□□ 0.18
COL6A1-201ENST00000361866 RAD50Q92878 1312 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 GRM8O00222 908 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 TRIM22Q8IYM9 498 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 CCDC171Q6TFL3 1326 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 PHF23Q9BUL5 403 aaPredicted RBP16.18■□□□□ 0.18
COL6A1-201ENST00000361866 CBX8Q9HC52 389 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 CWC15Q9P013 229 aaKnown RBP16.18■□□□□ 0.18
COL6A1-201ENST00000361866 ZFYVE9O95405 1425 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 NEMFO60524 1076 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 LIG1P18858 919 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 FAM193AP78312 1265 aa16.18■□□□□ 0.18
COL6A1-201ENST00000361866 NCBP3Q53F19 620 aaKnown RBP16.18■□□□□ 0.18
COL6A1-201ENST00000361866 APOBRQ0VD83 1088 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 ARHGAP29Q52LW3 1261 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 CCDC129Q6ZRS4 1044 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 SMAP1Q8IYB5 467 aaPredicted RBP16.17■□□□□ 0.18
COL6A1-201ENST00000361866 AK7Q96M32 723 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 HYPKQ9NX55 129 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 RAD21O60216 631 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 EDC3Q96F86 508 aaKnown RBP16.17■□□□□ 0.18
COL6A1-201ENST00000361866 USP44Q9H0E7 712 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 ACBD3Q9H3P7 528 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 ZBTB3Q9H5J0 574 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 SBNO2Q9Y2G9 1366 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 KDM5AP29375 1690 aaKnown RBP16.17■□□□□ 0.18
COL6A1-201ENST00000361866 COPS6Q7L5N1 327 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 MICU3Q86XE3 530 aa16.17■□□□□ 0.18
COL6A1-201ENST00000361866 GSDMDP57764 484 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 GNG11P61952 73 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 ZSCAN16Q9H4T2 348 aaPredicted RBP16.16■□□□□ 0.18
COL6A1-201ENST00000361866 JAK2O60674 1132 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 XBP1P17861 261 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 CNNM3Q8NE01 707 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 RUFY1Q96T51 708 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 PYCARDQ9ULZ3 195 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 PTH1RQ03431 593 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 ME3Q16798 604 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 AEBP2Q6ZN18 517 aaPredicted RBP16.16■□□□□ 0.18
COL6A1-201ENST00000361866 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.16■□□□□ 0.18
COL6A1-201ENST00000361866 STRN4Q9NRL3 753 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 HMG20BQ9P0W2 317 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 PHF8Q9UPP1 1060 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 SYNMO15061 1565 aa16.16■□□□□ 0.18
COL6A1-201ENST00000361866 A0A1B0GVL5 298 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 SYT10Q6XYQ8 523 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 XAGE3Q8WTP9 111 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 NOL10Q9BSC4 688 aaKnown RBP16.15■□□□□ 0.18
COL6A1-201ENST00000361866 HMGB1P09429 215 aaKnown RBP16.15■□□□□ 0.18
COL6A1-201ENST00000361866 SMARCE1Q969G3 411 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 SAMD9LQ8IVG5 1584 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 KIF4BQ2VIQ3 1234 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 IFNKQ9P0W0 207 aa16.15■□□□□ 0.18
COL6A1-201ENST00000361866 HSP90AB3PQ58FF7 597 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 NCOA5Q9HCD5 579 aaKnown RBP16.14■□□□□ 0.17
COL6A1-201ENST00000361866 KLF18A0A0U1RQI7 1052 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 ZNF213O14771 459 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 OTUD7BQ6GQQ9 843 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 KSR2Q6VAB6 950 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 SLU7O95391 586 aaKnown RBP16.14■□□□□ 0.17
COL6A1-201ENST00000361866 UBASH3AP57075 661 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 MRPS27Q92552 414 aaKnown RBP16.14■□□□□ 0.17
COL6A1-201ENST00000361866 GTF3C6Q969F1 213 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 LGR6Q9HBX8 967 aa16.14■□□□□ 0.17
COL6A1-201ENST00000361866 RNF216Q9NWF9 866 aaPredicted RBP16.14■□□□□ 0.17
COL6A1-201ENST00000361866 TTC41PQ6P2S7 1318 aa16.13■□□□□ 0.17
COL6A1-201ENST00000361866 ZSCAN12O43309 604 aa16.13■□□□□ 0.17
COL6A1-201ENST00000361866 CAVIN2O95810 425 aa16.13■□□□□ 0.17
COL6A1-201ENST00000361866 TDO2P48775 406 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms