RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 NUP62CLQ9H1M0 184 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 BMP2KQ9NSY1 1161 aaPredicted RBP17.43■□□□□ 0.38
COL17A1-201ENST00000353479 MFSD6Q6ZSS7 791 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 CCDC144CPQ8IYA2 1237 aa17.43■□□□□ 0.38
COL17A1-201ENST00000353479 FAM98CQ17RN3 349 aaKnown RBP17.42■□□□□ 0.38
COL17A1-201ENST00000353479 ODF2Q5BJF6 829 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 TMEM67Q5HYA8 995 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 G2E3Q7L622 706 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 SPC24Q8NBT2 197 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 EFCAB6Q5THR3 1501 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 TSPY2A6NKD2 308 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 CEP85Q6P2H3 762 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 CYP7A1P22680 504 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 PDE4BQ07343 736 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 CEP57L1Q8IYX8 460 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 HELBQ8NG08 1087 aaPredicted RBP17.42■□□□□ 0.38
COL17A1-201ENST00000353479 KDM5DQ9BY66 1539 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 SSRP1Q08945 709 aaKnown RBP17.42■□□□□ 0.38
COL17A1-201ENST00000353479 NEK1Q96PY6 1258 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 ERCC6L2Q5T890 1561 aa17.42■□□□□ 0.38
COL17A1-201ENST00000353479 F8W031 263 aaPredicted RBP17.42■□□□□ 0.38
COL17A1-201ENST00000353479 CRNKL1Q9BZJ0 848 aaKnown RBP17.42■□□□□ 0.38
COL17A1-201ENST00000353479 ZFYVE27Q5T4F4 411 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 MLH3Q9UHC1 1453 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 RAB11FIP4Q86YS3 637 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 METP08581 1390 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 SMARCE1Q969G3 411 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 GSTO1P78417 241 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 TANGO6Q9C0B7 1094 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 WWC3Q9ULE0 1092 aa17.41■□□□□ 0.38
COL17A1-201ENST00000353479 UGGT1Q9NYU2 1555 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 NCOA7Q8NI08 942 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 PREX2Q70Z35 1606 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 HMGN5P82970 282 aaKnown RBP17.4■□□□□ 0.38
COL17A1-201ENST00000353479 TBC1D2Q9BYX2 928 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 SLC52A2Q9HAB3 445 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 BICC1Q9H694 974 aaKnown RBP17.4■□□□□ 0.38
COL17A1-201ENST00000353479 CCNL1Q9UK58 526 aaPredicted RBP17.4■□□□□ 0.38
COL17A1-201ENST00000353479 PARP3Q9Y6F1 533 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 PLXNC1O60486 1568 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 HLA-DOAP06340 250 aa17.4■□□□□ 0.38
COL17A1-201ENST00000353479 MICU3Q86XE3 530 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 TRIM35Q9UPQ4 493 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 PPFIA3O75145 1194 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 ZFYP08048 801 aaPredicted RBP17.39■□□□□ 0.37
COL17A1-201ENST00000353479 TRAPPC3LQ5T215 181 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 HMG20BQ9P0W2 317 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 USP16Q9Y5T5 823 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 KDM6BO15054 1643 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 PRIM1P49642 420 aaKnown RBP17.39■□□□□ 0.37
COL17A1-201ENST00000353479 SOS1Q07889 1333 aaPredicted RBP17.39■□□□□ 0.37
COL17A1-201ENST00000353479 CAMK4Q16566 473 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 FAM43AQ8N2R8 423 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 MNS1Q8NEH6 495 aa17.39■□□□□ 0.37
COL17A1-201ENST00000353479 NLRP5P59047 1200 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 TFCP2Q12800 502 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 SLC9C2Q5TAH2 1124 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 MAGI2Q86UL8 1455 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 SLC4A4Q9Y6R1 1079 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 FEZ1Q99689 392 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 KAT14Q9H8E8 782 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 NSFL1CQ9UNZ2 370 aaKnown RBP17.38■□□□□ 0.37
COL17A1-201ENST00000353479 PLEKHG1Q9ULL1 1385 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 HECW2Q9P2P5 1572 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 FAM89AQ96GI7 184 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 VAT1LQ9HCJ6 419 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 ZBTB40Q9NUA8 1239 aa17.38■□□□□ 0.37
COL17A1-201ENST00000353479 NAA16Q6N069 864 aaPredicted RBP17.37■□□□□ 0.37
COL17A1-201ENST00000353479 ZNF804AQ7Z570 1209 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 PAG1Q9NWQ8 432 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 TMEM94Q12767 1356 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 CHL1O00533 1208 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 ZGPATQ8N5A5 531 aaKnown RBP17.37■□□□□ 0.37
COL17A1-201ENST00000353479 DCTPP1Q9H773 170 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 CABP5Q9NP86 173 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 BABAM1Q9NWV8 329 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 GJB2P29033 226 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 MPNDQ8N594 471 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 PLBD2Q8NHP8 589 aa17.37■□□□□ 0.37
COL17A1-201ENST00000353479 IARSP41252 1262 aaKnown RBP17.36■□□□□ 0.37
COL17A1-201ENST00000353479 SYCP1Q15431 976 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 MCMDC2Q4G0Z9 681 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 WDR78Q5VTH9 848 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 MYO1BO43795 1136 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 A1BGP04217 495 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 USP21Q9UK80 565 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 CCDC194A0A1B0GVG4 234 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 METAP2P50579 478 aaKnown RBP eCLIP17.36■□□□□ 0.37
COL17A1-201ENST00000353479 DHX8Q14562 1220 aaKnown RBP17.36■□□□□ 0.37
COL17A1-201ENST00000353479 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.36■□□□□ 0.37
COL17A1-201ENST00000353479 ESYT1Q9BSJ8 1104 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 SCAND2PQ9GZW5 306 aaPredicted RBP17.36■□□□□ 0.37
COL17A1-201ENST00000353479 KDM5AP29375 1690 aaKnown RBP17.36■□□□□ 0.37
COL17A1-201ENST00000353479 SSFA2P28290 1259 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 PPFIBP1Q86W92 1011 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 CUL5Q93034 780 aa17.36■□□□□ 0.37
COL17A1-201ENST00000353479 KIF5BP33176 963 aa17.35■□□□□ 0.37
COL17A1-201ENST00000353479 GPS2Q13227 327 aa17.35■□□□□ 0.37
COL17A1-201ENST00000353479 ZNHIT6Q9NWK9 470 aaKnown RBP17.35■□□□□ 0.37
COL17A1-201ENST00000353479 MCM5P33992 734 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms