RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 MAGEB6Q8N7X4 407 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 WASF1Q92558 559 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 USP21Q9UK80 565 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC192P0DO97 292 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 TMEM266Q2M3C6 531 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 TMCO5BA8MYB1 307 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 UBE4AQ14139 1066 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 TCHPQ9BT92 498 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 CEP131Q9UPN4 1083 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 GBP2P32456 591 aaPredicted RBP9.04□□□□□ -0.96
SCN9A-201ENST00000303354 IFIT1BQ5T764 474 aaKnown RBP9.04□□□□□ -0.96
SCN9A-201ENST00000303354 CNNM3Q8NE01 707 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 CCNL1Q9UK58 526 aaPredicted RBP9.04□□□□□ -0.96
SCN9A-201ENST00000303354 POTEJP0CG39 1038 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 GPCPD1Q9NPB8 672 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 WDR33Q9C0J8 1336 aaKnown RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 NAA16Q6N069 864 aaPredicted RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 EPB41L2O43491 1005 aaKnown RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 ARL1P40616 181 aaPredicted RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 PDE4BQ07343 736 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 SLFN5Q08AF3 891 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC112Q8NEF3 446 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 ORAI2Q96SN7 254 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 FANCIQ9NVI1 1328 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 GLRX3O76003 335 aaKnown RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 TAF4BQ92750 862 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 CRNKL1Q9BZJ0 848 aaKnown RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 LMAN1P49257 510 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 TNNQ9UQP3 1299 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 TAF5LO75529 589 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 MRPS9P82933 396 aaKnown RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 ZMYND15Q9H091 742 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 EHMT1Q9H9B1 1298 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 BRPF3Q9ULD4 1205 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 HOMER2Q9NSB8 354 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 IRS4O14654 1257 aaPredicted RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 MTIF2P46199 727 aaKnown RBP9.03□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC40Q4G0X9 1142 aa9.03□□□□□ -0.96
SCN9A-201ENST00000303354 PHACTR2O75167 634 aa9.02□□□□□ -0.96
SCN9A-201ENST00000303354 METAP2P50579 478 aaKnown RBP eCLIP9.02□□□□□ -0.96
SCN9A-201ENST00000303354 ACBD3Q9H3P7 528 aa9.02□□□□□ -0.96
SCN9A-201ENST00000303354 LETM1O95202 739 aaPredicted RBP9.02□□□□□ -0.96
SCN9A-201ENST00000303354 IL2RBP14784 551 aa9.02□□□□□ -0.96
SCN9A-201ENST00000303354 SPOUT1Q5T280 376 aaKnown RBP9.02□□□□□ -0.96
SCN9A-201ENST00000303354 GJB2P29033 226 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 RPAP2Q8IXW5 612 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 NUP88Q99567 741 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 BEGAINQ9BUH8 593 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 MCM9Q9NXL9 1143 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 MAPK8IP2Q13387 824 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 SMARCC2Q8TAQ2 1214 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 RPGRIP1LQ68CZ1 1315 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 MAGEB6P1A0A0J9YX57 407 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 PPP1R12BO60237 982 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 CNGA1P29973 690 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 FAM89AQ96GI7 184 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 LDHCP07864 332 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 ARID5AQ03989 594 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 CHMP2AO43633 222 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 ZNF594Q96JF6 807 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 ATF5Q9Y2D1 282 aaPredicted RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 NOP2P46087 812 aaKnown RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 PRIM1P49642 420 aaKnown RBP9.02□□□□□ -0.97
SCN9A-201ENST00000303354 JAKMIP3Q5VZ66 844 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 CFAP45Q9UL16 551 aa9.02□□□□□ -0.97
SCN9A-201ENST00000303354 TAF12Q16514 161 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 MTHFSDQ2M296 383 aaKnown RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 SLC9C2Q5TAH2 1124 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 ZNF397Q8NF99 534 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 SRRTQ9BXP5 876 aaKnown RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 TOPBP1Q92547 1522 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 CALML4Q96GE6 196 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 STAC3Q96MF2 364 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 MEIS3Q99687 375 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 TROQ12816 1431 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 TNRQ92752 1358 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 GOLGA6L10A6NI86 522 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 IARSP41252 1262 aaKnown RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 SYNCQ9H7C4 482 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 GSTTP1A0A1W2PQM5 241 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 UFL1O94874 794 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 PDE3AQ14432 1141 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 OTUD6BQ8N6M0 293 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 RBM27Q9P2N5 1060 aaKnown RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 KRT32Q14532 448 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 NOD1Q9Y239 953 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 NDUFB9Q9Y6M9 179 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 POLA1P09884 1462 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 MYCLP12524 364 aaPredicted RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 MCM2P49736 904 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 HMGN5P82970 282 aaKnown RBP9.01□□□□□ -0.97
SCN9A-201ENST00000303354 DOK7Q18PE1 504 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 FKBP15Q5T1M5 1219 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 TPTE2Q6XPS3 522 aa9.01□□□□□ -0.97
SCN9A-201ENST00000303354 KLF18A0A0U1RQI7 1052 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 ERCC3P19447 782 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 RFX1P22670 979 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 FCHSD1Q86WN1 690 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 ZNF804AQ7Z570 1209 aa9□□□□□ -0.97
SCN9A-201ENST00000303354 CCDC102AQ96A19 550 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms