RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 STARD3NLO95772 234 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 KIF6Q6ZMV9 814 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 COL18A1P39060 1754 aa13.89□□□□□ -0.19
CUX1-202ENST00000292538 RAB3GAP1Q15042 981 aa13.88□□□□□ -0.19
CUX1-202ENST00000292538 TAF7LQ5H9L4 462 aa13.88□□□□□ -0.19
CUX1-202ENST00000292538 MCTP1Q6DN14 999 aa13.88□□□□□ -0.19
CUX1-202ENST00000292538 EVI5LQ96CN4 794 aa13.88□□□□□ -0.19
CUX1-202ENST00000292538 BRPF3Q9ULD4 1205 aa13.88□□□□□ -0.19
CUX1-202ENST00000292538 NMIQ13287 307 aaPredicted RBP13.88□□□□□ -0.19
CUX1-202ENST00000292538 NKX1-1Q15270 411 aaPredicted RBP13.88□□□□□ -0.19
CUX1-202ENST00000292538 LRRC24Q50LG9 513 aa13.88□□□□□ -0.19
CUX1-202ENST00000292538 DDX46Q7L014 1031 aaKnown RBP13.88□□□□□ -0.19
CUX1-202ENST00000292538 DBNLQ9UJU6 430 aaKnown RBP13.88□□□□□ -0.19
CUX1-202ENST00000292538 CASTP20810 708 aaKnown RBP13.87□□□□□ -0.19
CUX1-202ENST00000292538 TNNI3KQ59H18 835 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 RUFY2Q8WXA3 655 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 PUS3Q9BZE2 481 aaKnown RBP13.87□□□□□ -0.19
CUX1-202ENST00000292538 FPGT-TNNI3KV9GXZ4 949 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 CACNA1FO60840 1977 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 DDIT3P35638 169 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 HLFQ16534 295 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 SLFNL1Q499Z3 407 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 TCEANC2Q96MN5 208 aa13.87□□□□□ -0.19
CUX1-202ENST00000292538 XIRP1Q702N8 1843 aaKnown RBP13.86□□□□□ -0.19
CUX1-202ENST00000292538 JAKMIP1Q96N16 626 aaKnown RBP13.86□□□□□ -0.19
CUX1-202ENST00000292538 LSG1Q9H089 658 aaKnown RBP13.86□□□□□ -0.19
CUX1-202ENST00000292538 SNX14Q9Y5W7 946 aa13.86□□□□□ -0.19
CUX1-202ENST00000292538 HSPA4P34932 840 aa13.86□□□□□ -0.19
CUX1-202ENST00000292538 FOXO4P98177 505 aa13.86□□□□□ -0.19
CUX1-202ENST00000292538 CCDC57Q2TAC2 916 aa13.86□□□□□ -0.19
CUX1-202ENST00000292538 CIZ1Q9ULV3 898 aaPredicted RBP13.86□□□□□ -0.19
CUX1-202ENST00000292538 A0A0D9SFI3 127 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 DDX11L8A8MPP1 907 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 RFX5P48382 616 aaPredicted RBP13.85□□□□□ -0.19
CUX1-202ENST00000292538 KCNQ4P56696 695 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 GORABQ5T7V8 394 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 COPRSQ9NQ92 184 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 ZBTB1Q9Y2K1 713 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 H7C1W4 665 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 DDB1Q16531 1140 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 CCDC129Q6ZRS4 1044 aa13.85□□□□□ -0.19
CUX1-202ENST00000292538 GOLGA6L22H0YM25 854 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 ADCK5Q3MIX3 580 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 CCDC191Q8NCU4 936 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 SLC4A9Q96Q91 983 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 SEC62Q99442 399 aaKnown RBP13.84□□□□□ -0.19
CUX1-202ENST00000292538 SNRKQ9NRH2 765 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 RAD50Q92878 1312 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 GOLIM4O00461 696 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 FKBP4Q02790 459 aaKnown RBP eCLIP13.84□□□□□ -0.19
CUX1-202ENST00000292538 TCIRG1Q13488 830 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 C5P01031 1676 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 CASP7P55210 303 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 IL27Q8NEV9 243 aa13.84□□□□□ -0.19
CUX1-202ENST00000292538 ZNF589Q86UQ0 364 aaPredicted RBP13.83□□□□□ -0.2
CUX1-202ENST00000292538 RBM8AQ9Y5S9 174 aaKnown RBP13.83□□□□□ -0.2
CUX1-202ENST00000292538 BAG4O95429 457 aaKnown RBP13.83□□□□□ -0.2
CUX1-202ENST00000292538 RABL6Q3YEC7 729 aaPredicted RBP13.83□□□□□ -0.2
CUX1-202ENST00000292538 TRMT112Q9UI30 125 aaKnown RBP13.83□□□□□ -0.2
CUX1-202ENST00000292538 DDX49Q9Y6V7 483 aaKnown RBP13.83□□□□□ -0.2
CUX1-202ENST00000292538 SCN11AQ9UI33 1791 aa13.82□□□□□ -0.2
CUX1-202ENST00000292538 ZKSCAN1P17029 563 aaPredicted RBP13.82□□□□□ -0.2
CUX1-202ENST00000292538 AK2P54819 239 aa13.82□□□□□ -0.2
CUX1-202ENST00000292538 NUCB2P80303 420 aa13.82□□□□□ -0.2
CUX1-202ENST00000292538 C8orf37Q96NL8 207 aa13.82□□□□□ -0.2
CUX1-202ENST00000292538 ANAPC15P60006 121 aa13.82□□□□□ -0.2
CUX1-202ENST00000292538 PRPF40AO75400 957 aaKnown RBP13.81□□□□□ -0.2
CUX1-202ENST00000292538 ATP6V1AP38606 617 aa13.81□□□□□ -0.2
CUX1-202ENST00000292538 COL9A3Q14050 684 aaPredicted RBP13.81□□□□□ -0.2
CUX1-202ENST00000292538 FAM182BQ5T319 152 aa13.81□□□□□ -0.2
CUX1-202ENST00000292538 CEP126Q9P2H0 1117 aa13.81□□□□□ -0.2
CUX1-202ENST00000292538 USP42Q9H9J4 1324 aaKnown RBP13.81□□□□□ -0.2
CUX1-202ENST00000292538 FAM98CQ17RN3 349 aaKnown RBP13.81□□□□□ -0.2
CUX1-202ENST00000292538 SMIM5Q71RC9 77 aa13.81□□□□□ -0.2
CUX1-202ENST00000292538 TEX13AQ9BXU3 409 aaPredicted RBP13.81□□□□□ -0.2
CUX1-202ENST00000292538 ERBB4Q15303 1308 aa13.81□□□□□ -0.2
CUX1-202ENST00000292538 KCNQ2O43526 872 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 ATG9AQ7Z3C6 839 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 DZIP3Q86Y13 1208 aaKnown RBP13.8□□□□□ -0.2
CUX1-202ENST00000292538 CWC22Q9HCG8 908 aaKnown RBP13.8□□□□□ -0.2
CUX1-202ENST00000292538 PDRG1Q9NUG6 133 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 TAF6LQ9Y6J9 622 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 A0A1B0GUL7 405 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 IFIT5Q13325 482 aaKnown RBP13.8□□□□□ -0.2
CUX1-202ENST00000292538 NGLY1Q96IV0 654 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 CCDC171Q6TFL3 1326 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 GOLGA6L3A6NEY3 463 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 EYA2O00167 538 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 CYP19A1P11511 503 aaPredicted RBP13.8□□□□□ -0.2
CUX1-202ENST00000292538 HSP90AB3PQ58FF7 597 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 CREB3L3Q68CJ9 461 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 GDPD2Q9HCC8 539 aa13.8□□□□□ -0.2
CUX1-202ENST00000292538 UBAP1LF5GYI3 381 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 MCM2P49736 904 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 STK3Q13188 491 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 CCDC83Q8IWF9 413 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 NECAB1Q8N987 351 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 HELBQ8NG08 1087 aaPredicted RBP13.79□□□□□ -0.2
CUX1-202ENST00000292538 MRC1P22897 1456 aa13.79□□□□□ -0.2
CUX1-202ENST00000292538 ATP5JP18859 108 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms