RNA–Protein interactions for RNA: ENST00000277817.10

HERC4-201, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 4,371 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-201ENST00000277817 IRX6P78412 446 aaPredicted RBP3.81□□□□□ -1.8
HERC4-201ENST00000277817 BMS1Q14692 1282 aaKnown RBP3.81□□□□□ -1.8
HERC4-201ENST00000277817 TSNAXIP1Q2TAA8 658 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 C6orf132Q5T0Z8 1188 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 PPP1R18Q6NYC8 613 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 KIAA1024Q9UPX6 916 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 CCDC144AA2RUR9 1427 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 C4AP0C0L4 1744 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 C4BP0C0L5 1744 aa3.81□□□□□ -1.8
HERC4-201ENST00000277817 GEMIN8Q9NWZ8 242 aaKnown RBP3.81□□□□□ -1.8
HERC4-201ENST00000277817 PRPF40AO75400 957 aaKnown RBP3.8□□□□□ -1.8
HERC4-201ENST00000277817 BOLA1Q9Y3E2 137 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 EMILIN1Q9Y6C2 1016 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 ADGRB1O14514 1584 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 LRRC37A3O60309 1634 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 POTEB3A0JP26 581 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 ATP5J2-PTCD1G3V325 749 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 NR6A1Q15406 480 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 SOGA3Q5TF21 947 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 POTEBQ6S5H4 581 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 CITED4Q96RK1 184 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 SIN3AQ96ST3 1273 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 PRKD2Q9BZL6 878 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 ZNF700Q9H0M5 742 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 BCL11AQ9H165 835 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 CEP126Q9P2H0 1117 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 RALGAPBQ86X10 1494 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 PER1O15534 1290 aaPredicted RBP3.8□□□□□ -1.8
HERC4-201ENST00000277817 KLF4O43474 513 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 FAM200AQ8TCP9 573 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 COL4A3BPQ9Y5P4 624 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 MTUS2Q5JR59 1369 aa3.8□□□□□ -1.8
HERC4-201ENST00000277817 SENP3-EIF4A1A0A087X0R7 540 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 PRMT3O60678 531 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 PRKAR2AP13861 404 aaKnown RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 TNNI2P48788 182 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 SF3B2Q13435 895 aaKnown RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 ESPNB1AK53 854 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 SPTY2D1Q68D10 685 aaPredicted RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 CAPN12Q6ZSI9 719 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 RBM42Q9BTD8 480 aaKnown RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 IFT57Q9NWB7 429 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 TSKSQ9UJT2 592 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 PCDHGA11Q9Y5H2 935 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 SLIT3O75094 1523 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 BRD4O60885 1362 aaPredicted RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 FZD6O60353 706 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 PDGFRBP09619 1106 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 SEMA3FQ13275 785 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 RASA3Q14644 834 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 EAPPQ56P03 285 aaPredicted RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 C9orf131Q5VYM1 1079 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 LRP10Q7Z4F1 713 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 MS4A3Q96HJ5 214 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 SENP7Q9BQF6 1050 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 TANGO6Q9C0B7 1094 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 MRS2Q9HD23 443 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 TERF2IPQ9NYB0 399 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 RGPD8O14715 1765 aaPredicted RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 PIK3C2AO00443 1686 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 SLIT2O94813 1529 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 YTHDC2Q9H6S0 1430 aaKnown RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 TNFRSF10BO14763 440 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 TMC1Q8TDI8 760 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 MORC4Q8TE76 937 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 PURBQ96QR8 312 aaKnown RBP3.79□□□□□ -1.8
HERC4-201ENST00000277817 KCNQ5Q9NR82 932 aa3.79□□□□□ -1.8
HERC4-201ENST00000277817 EXOC5O00471 708 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 ERMP1Q7Z2K6 904 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 APBB1IPQ7Z5R6 666 aaPredicted RBP3.78□□□□□ -1.8
HERC4-201ENST00000277817 HLA-CQ95604 372 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 PARP2Q9UGN5 583 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 MRPL42Q9Y6G3 142 aaKnown RBP3.78□□□□□ -1.8
HERC4-201ENST00000277817 TAF1LQ8IZX4 1826 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 SLC10A3P09131 477 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 MTMR2Q13614 643 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 LYPD8Q6UX82 237 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 CACTIN-AS1Q8N1I8 211 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 TMTC2Q8N394 836 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 CNTN3Q9P232 1028 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 TTF2Q9UNY4 1162 aaKnown RBP3.78□□□□□ -1.8
HERC4-201ENST00000277817 PKD1L3Q7Z443 1732 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 ILDR2Q71H61 639 aa3.78□□□□□ -1.8
HERC4-201ENST00000277817 AFDNP55196 1824 aaKnown RBP3.78□□□□□ -1.8
HERC4-201ENST00000277817 VPS8Q8N3P4 1428 aa3.78□□□□□ -1.81
HERC4-201ENST00000277817 IGBP1P78318 339 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 DPYDQ12882 1025 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 IER5LQ5T953 404 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 PIP4P2Q8N4L2 257 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 CDCA7LQ96GN5 454 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 ZNF512BQ96KM6 892 aaPredicted RBP3.77□□□□□ -1.81
HERC4-201ENST00000277817 RGS17Q9UGC6 210 aaPredicted RBP3.77□□□□□ -1.81
HERC4-201ENST00000277817 PRKAB1Q9Y478 270 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 NRXN2Q9P2S2 1712 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 ABCC5O15440 1437 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 MYOM3Q5VTT5 1437 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 ARID4BQ4LE39 1312 aaPredicted RBP3.77□□□□□ -1.81
HERC4-201ENST00000277817 TSPY4P0CV99 314 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 TSPY10P0CW01 314 aa3.77□□□□□ -1.81
HERC4-201ENST00000277817 EIF4G2P78344 907 aaKnown RBP eCLIP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms