RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RBM27Q9P2N5 1060 aaKnown RBP22.05■■□□□ 1.12
UPF1-201ENST00000262803 HDAC9Q9UKV0 1011 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 PARD3Q8TEW0 1356 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 TNRQ92752 1358 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 BICRAQ9NZM4 1560 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 MEIS3Q99687 375 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 TMCO3Q6UWJ1 677 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 CRACR2AQ9BSW2 395 aa22.05■■□□□ 1.12
UPF1-201ENST00000262803 C6orf229H3BNL8 230 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 GCOM1H8Y6P7 765 aaPredicted RBP22.04■■□□□ 1.12
UPF1-201ENST00000262803 STAMBPO95630 424 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 MYZAPP0CAP1 466 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 FAM193AP78312 1265 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 ERMNQ8TAM6 284 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 CCDC102AQ96A19 550 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 B4DLN1 442 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 MRPL12P52815 198 aaKnown RBP22.04■■□□□ 1.12
UPF1-201ENST00000262803 GTPBP4Q9BZE4 634 aaKnown RBP22.04■■□□□ 1.12
UPF1-201ENST00000262803 GSDMDP57764 484 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 CENPHQ9H3R5 247 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 TMX3Q96JJ7 454 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 BIVM-ERCC5R4GMW8 1640 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 PAFAH1B1P43034 410 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 TMEM87AQ8NBN3 555 aa22.04■■□□□ 1.12
UPF1-201ENST00000262803 NAA15Q9BXJ9 866 aaKnown RBP22.04■■□□□ 1.12
UPF1-201ENST00000262803 FANCAO15360 1455 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 GOLIM4O00461 696 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 GNAQP50148 359 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 HOOK3Q86VS8 718 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 RHPN1Q8TCX5 695 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 FERMT2Q96AC1 680 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 ACEP12821 1306 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 ADCY5O95622 1261 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 GOLGA6L10A0A0M3HER8 536 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 URI1O94763 535 aaPredicted RBP22.03■■□□□ 1.12
UPF1-201ENST00000262803 UBE2HP62256 183 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 NCOA7Q8NI08 942 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 ALS2CR12Q96Q35 445 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 RMND1Q9NWS8 449 aa22.03■■□□□ 1.12
UPF1-201ENST00000262803 RFC4P35249 363 aa22.02■■□□□ 1.12
UPF1-201ENST00000262803 KRT23Q9C075 422 aa22.02■■□□□ 1.12
UPF1-201ENST00000262803 URB2Q14146 1524 aaKnown RBP22.02■■□□□ 1.12
UPF1-201ENST00000262803 IARSP41252 1262 aaKnown RBP22.02■■□□□ 1.12
UPF1-201ENST00000262803 LDHAL6AQ6ZMR3 332 aa22.02■■□□□ 1.12
UPF1-201ENST00000262803 ZBTB3Q9H5J0 574 aa22.02■■□□□ 1.12
UPF1-201ENST00000262803 TNNT1P13805 278 aa22.02■■□□□ 1.11
UPF1-201ENST00000262803 C8orf34Q49A92 452 aa22.02■■□□□ 1.11
UPF1-201ENST00000262803 CNNM3Q8NE01 707 aa22.02■■□□□ 1.11
UPF1-201ENST00000262803 CNNM2Q9H8M5 875 aa22.02■■□□□ 1.11
UPF1-201ENST00000262803 ADAMTS2O95450 1211 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 MFSD6Q6ZSS7 791 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 IFI16Q16666 785 aaKnown RBP22.01■■□□□ 1.11
UPF1-201ENST00000262803 UBE3BQ7Z3V4 1068 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 LRRC45Q96CN5 670 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 NEK1Q96PY6 1258 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 ANXA1P04083 346 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 NBPF7P0C2Y1 421 aaPredicted RBP22.01■■□□□ 1.11
UPF1-201ENST00000262803 ANKRD44Q8N8A2 993 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 DNAJC5BQ9UF47 199 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 NPHP3Q7Z494 1330 aa22.01■■□□□ 1.11
UPF1-201ENST00000262803 ZNF165P49910 485 aa22■■□□□ 1.11
UPF1-201ENST00000262803 C16orf45Q96MC5 204 aaPredicted RBP22■■□□□ 1.11
UPF1-201ENST00000262803 MCM5P33992 734 aa22■■□□□ 1.11
UPF1-201ENST00000262803 PDE1AP54750 535 aa22■■□□□ 1.11
UPF1-201ENST00000262803 ZSCAN23Q3MJ62 389 aa22■■□□□ 1.11
UPF1-201ENST00000262803 UBA5Q9GZZ9 404 aa22■■□□□ 1.11
UPF1-201ENST00000262803 USP16Q9Y5T5 823 aa22■■□□□ 1.11
UPF1-201ENST00000262803 ATP5J2-PTCD1G3V325 749 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 TRMT1Q9NXH9 659 aaKnown RBP21.99■■□□□ 1.11
UPF1-201ENST00000262803 UGGT2Q9NYU1 1516 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 PRAG1Q86YV5 1406 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 TMEM67Q5HYA8 995 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 LUZP1Q86V48 1076 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 SNRKQ9NRH2 765 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 TOM1O60784 492 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 ALDH1L1O75891 902 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 STX1AQ16623 288 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 TSPY2A6NKD2 308 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 BIN1O00499 593 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 KIF4BQ2VIQ3 1234 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 EHBP1Q8NDI1 1231 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 NYXQ9GZU5 481 aa21.99■■□□□ 1.11
UPF1-201ENST00000262803 ZSCAN16Q9H4T2 348 aaPredicted RBP21.99■■□□□ 1.11
UPF1-201ENST00000262803 CASQ1P31415 396 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 ANKRD24Q8TF21 1146 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 KDM5BQ9UGL1 1544 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 CCDC97Q96F63 343 aaPredicted RBP21.98■■□□□ 1.11
UPF1-201ENST00000262803 PKNOX2Q96KN3 472 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 NUP160Q12769 1436 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 MRPL50Q8N5N7 158 aaKnown RBP21.98■■□□□ 1.11
UPF1-201ENST00000262803 UVSSAQ2YD98 709 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 DRC1Q96MC2 740 aa21.98■■□□□ 1.11
UPF1-201ENST00000262803 ORC3Q9UBD5 711 aaPredicted RBP21.98■■□□□ 1.11
UPF1-201ENST00000262803 ERICH4A6NGS2 130 aa21.97■■□□□ 1.11
UPF1-201ENST00000262803 C8orf58Q8NAV2 365 aa21.97■■□□□ 1.11
UPF1-201ENST00000262803 HCLS1P14317 486 aaPredicted RBP21.97■■□□□ 1.11
UPF1-201ENST00000262803 CEBPAP49715 358 aaPredicted RBP21.97■■□□□ 1.11
UPF1-201ENST00000262803 ZSCAN22P10073 491 aaPredicted RBP21.97■■□□□ 1.11
UPF1-201ENST00000262803 SMC1AQ14683 1233 aaKnown RBP21.97■■□□□ 1.11
UPF1-201ENST00000262803 WDR78Q5VTH9 848 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms