RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 ZSCAN12O43309 604 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 VPS36Q86VN1 386 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 NUP88Q99567 741 aaPredicted RBP10.07□□□□□ -0.8
PTCD3-201ENST00000254630 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP10.07□□□□□ -0.8
PTCD3-201ENST00000254630 NPATQ14207 1427 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 ZGPATQ8N5A5 531 aaKnown RBP10.07□□□□□ -0.8
PTCD3-201ENST00000254630 SETDB2Q96T68 719 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 LARP6Q9BRS8 491 aaKnown RBP10.07□□□□□ -0.8
PTCD3-201ENST00000254630 TOP1P11387 765 aaKnown RBP10.07□□□□□ -0.8
PTCD3-201ENST00000254630 AKAP4Q5JQC9 854 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 FSIP1Q8NA03 581 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 SLC26A6Q9BXS9 759 aa10.07□□□□□ -0.8
PTCD3-201ENST00000254630 PI4KAP2A4QPH2 592 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 TBC1D9Q6ZT07 1266 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 PI4KAP1Q8N8J0 262 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 SPDYE4A6NLX3 237 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 KIF5CO60282 957 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 TSPY3P0CV98 308 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 TSPY8P0CW00 308 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 NEK1Q96PY6 1258 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 PYM1Q9BRP8 204 aaKnown RBP10.06□□□□□ -0.8
PTCD3-201ENST00000254630 SNRKQ9NRH2 765 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 USP16Q9Y5T5 823 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 TRPM2O94759 1503 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 HAND2P61296 217 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 ZNF804AQ7Z570 1209 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 NYXQ9GZU5 481 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 HDAC9Q9UKV0 1011 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 STX1AQ16623 288 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 FAM114A1Q8IWE2 563 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 KRT23Q9C075 422 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 NPHP3Q7Z494 1330 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 NUP153P49790 1475 aaKnown RBP10.06□□□□□ -0.8
PTCD3-201ENST00000254630 CFAP74Q9C0B2 1584 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 EZRP15311 586 aaKnown RBP10.06□□□□□ -0.8
PTCD3-201ENST00000254630 ANAPC15P60006 121 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 UTP14AQ9BVJ6 771 aaKnown RBP10.06□□□□□ -0.8
PTCD3-201ENST00000254630 CLIP2Q9UDT6 1046 aa10.06□□□□□ -0.8
PTCD3-201ENST00000254630 IARSP41252 1262 aaKnown RBP10.05□□□□□ -0.8
PTCD3-201ENST00000254630 ANKRD13DQ6ZTN6 518 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 STXBP4Q6ZWJ1 553 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 SSFA2P28290 1259 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 SLC4A4Q9Y6R1 1079 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 PRAG1Q86YV5 1406 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 GOLGA6L7A0A1B0GV03 622 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 PRKCSHP14314 528 aaPredicted RBP10.05□□□□□ -0.8
PTCD3-201ENST00000254630 CCDC102AQ96A19 550 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 C8orf37Q96NL8 207 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 ZFYVE9O95405 1425 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 YEATS4O95619 227 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 TSHZ3Q63HK5 1081 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 CCDC91Q7Z6B0 441 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 RAB11FIP4Q86YS3 637 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 TCP11L1Q9NUJ3 509 aa10.05□□□□□ -0.8
PTCD3-201ENST00000254630 LRRC27Q9C0I9 530 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 GOPCQ9HD26 462 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 CYP7A1P22680 504 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 XAGE3Q8WTP9 111 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 SMARCC1Q92922 1105 aaPredicted RBP10.04□□□□□ -0.8
PTCD3-201ENST00000254630 SAMM50Q9Y512 469 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 SFPQP23246 707 aaKnown RBP eCLIP10.04□□□□□ -0.8
PTCD3-201ENST00000254630 MTIF2P46199 727 aaKnown RBP10.04□□□□□ -0.8
PTCD3-201ENST00000254630 IFIT1BQ5T764 474 aaKnown RBP10.04□□□□□ -0.8
PTCD3-201ENST00000254630 SYCP3Q8IZU3 236 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 DNAJC5BQ9UF47 199 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 ABCA5Q8WWZ7 1642 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 CCDC40Q4G0X9 1142 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 MAP3K5Q99683 1374 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 DNMT1P26358 1616 aaKnown RBP10.04□□□□□ -0.8
PTCD3-201ENST00000254630 NUCB1Q02818 461 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 WTAPQ15007 396 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 TMX1Q9H3N1 280 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 TCOF1Q13428 1488 aaKnown RBP10.04□□□□□ -0.8
PTCD3-201ENST00000254630 MICU3Q86XE3 530 aa10.04□□□□□ -0.8
PTCD3-201ENST00000254630 TOM1O60784 492 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 MCM5P33992 734 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 PPP4R3BQ5MIZ7 849 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 BICD1Q96G01 975 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 DRC1Q96MC2 740 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 DDX19AQ9NUU7 478 aaKnown RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 ABCC10Q5T3U5 1492 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 USO1O60763 962 aaKnown RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 MCM3P25205 808 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 EXOC1Q9NV70 894 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 KIF2AO00139 706 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 STX6O43752 255 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 PICALMQ13492 652 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 KANK3Q6NY19 840 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 SKAP1Q86WV1 359 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 MRPL50Q8N5N7 158 aaKnown RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 TMEM87AQ8NBN3 555 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 CTNNBL1Q8WYA6 563 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 MAGEB6P1A0A0J9YX57 407 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 TDRD12Q587J7 1177 aaKnown RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 CNNM2Q9H8M5 875 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 UBAP1LF5GYI3 381 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 F8W031 263 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-201ENST00000254630 GBP3Q9H0R5 595 aa10.03□□□□□ -0.8
PTCD3-201ENST00000254630 NCKAP5LQ9HCH0 1330 aa10.02□□□□□ -0.8
PTCD3-201ENST00000254630 SHANK2Q9UPX8 1470 aa10.02□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms