RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 ADAMTS8Q9UP79 889 aa27.53■■■□□ 2
NEDD8-201ENST00000250495 IARSP41252 1262 aaKnown RBP27.52■■■□□ 2
NEDD8-201ENST00000250495 PROSER3Q2NL68 480 aa27.52■■■□□ 2
NEDD8-201ENST00000250495 GRIPAP1Q4V328 841 aa27.52■■■□□ 2
NEDD8-201ENST00000250495 PSMD1Q99460 953 aa27.52■■■□□ 2
NEDD8-201ENST00000250495 TRIM35Q9UPQ4 493 aa27.52■■■□□ 2
NEDD8-201ENST00000250495 LAS1LQ9Y4W2 734 aaKnown RBP27.52■■■□□ 2
NEDD8-201ENST00000250495 ANXA1P04083 346 aa27.51■■□□□ 1.99
NEDD8-201ENST00000250495 HSP90AB3PQ58FF7 597 aa27.51■■□□□ 1.99
NEDD8-201ENST00000250495 COPS6Q7L5N1 327 aa27.51■■□□□ 1.99
NEDD8-201ENST00000250495 JMYQ8N9B5 988 aa27.51■■□□□ 1.99
NEDD8-201ENST00000250495 L3MBTL3Q96JM7 780 aaPredicted RBP27.51■■□□□ 1.99
NEDD8-201ENST00000250495 NLRP3Q96P20 1036 aa27.51■■□□□ 1.99
NEDD8-201ENST00000250495 CRAMP1Q96RY5 1269 aa27.51■■□□□ 1.99
NEDD8-201ENST00000250495 UTP14AQ9BVJ6 771 aaKnown RBP27.51■■□□□ 1.99
NEDD8-201ENST00000250495 CHADLQ6NUI6 762 aa27.5■■□□□ 1.99
NEDD8-201ENST00000250495 NECTIN2Q92692 538 aa27.5■■□□□ 1.99
NEDD8-201ENST00000250495 AIMP1Q12904 312 aaKnown RBP27.49■■□□□ 1.99
NEDD8-201ENST00000250495 SLC10A5Q5PT55 438 aa27.49■■□□□ 1.99
NEDD8-201ENST00000250495 PRKRIP1Q9H875 184 aaPredicted RBP27.49■■□□□ 1.99
NEDD8-201ENST00000250495 DDX21Q9NR30 783 aaKnown RBP eCLIP27.49■■□□□ 1.99
NEDD8-201ENST00000250495 XAGE3Q8WTP9 111 aa27.48■■□□□ 1.99
NEDD8-201ENST00000250495 JDP2Q8WYK2 163 aa27.48■■□□□ 1.99
NEDD8-201ENST00000250495 FZD9O00144 591 aa27.47■■□□□ 1.99
NEDD8-201ENST00000250495 SCN4AP35499 1836 aa27.46■■□□□ 1.99
NEDD8-201ENST00000250495 RNF123Q5XPI4 1314 aa27.46■■□□□ 1.99
NEDD8-201ENST00000250495 TMX4Q9H1E5 349 aaPredicted RBP27.46■■□□□ 1.99
NEDD8-201ENST00000250495 TAF1DQ9H5J8 278 aaPredicted RBP27.46■■□□□ 1.99
NEDD8-201ENST00000250495 ZNF541Q9H0D2 1346 aa27.45■■□□□ 1.99
NEDD8-201ENST00000250495 KRT24Q2M2I5 525 aa27.45■■□□□ 1.98
NEDD8-201ENST00000250495 SNED1Q8TER0 1413 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 PPEF1O14829 653 aaPredicted RBP27.44■■□□□ 1.98
NEDD8-201ENST00000250495 HOXB7P09629 217 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 POTEIP0CG38 1075 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 POTEJP0CG39 1038 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 TCIRG1Q13488 830 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 C3orf67Q6ZVT6 689 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 LDHDQ86WU2 507 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 CFAP44Q96MT7 982 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 HACL1Q9UJ83 578 aa27.44■■□□□ 1.98
NEDD8-201ENST00000250495 NLRP10Q86W26 655 aa27.43■■□□□ 1.98
NEDD8-201ENST00000250495 TCERG1O14776 1098 aaKnown RBP27.42■■□□□ 1.98
NEDD8-201ENST00000250495 EIF6P56537 245 aaKnown RBP27.42■■□□□ 1.98
NEDD8-201ENST00000250495 HDGFL1Q5TGJ6 251 aa27.42■■□□□ 1.98
NEDD8-201ENST00000250495 GPC2Q8N158 579 aa27.42■■□□□ 1.98
NEDD8-201ENST00000250495 CHPF2Q9P2E5 772 aa27.42■■□□□ 1.98
NEDD8-201ENST00000250495 DBF4Q9UBU7 674 aaPredicted RBP27.41■■□□□ 1.98
NEDD8-201ENST00000250495 LARGE2Q8N3Y3 721 aa27.4■■□□□ 1.98
NEDD8-201ENST00000250495 TRMT112Q9UI30 125 aaKnown RBP27.4■■□□□ 1.98
NEDD8-201ENST00000250495 BBOX1O75936 387 aa27.39■■□□□ 1.98
NEDD8-201ENST00000250495 EPHX2P34913 555 aa27.39■■□□□ 1.98
NEDD8-201ENST00000250495 EAPPQ56P03 285 aaPredicted RBP27.39■■□□□ 1.98
NEDD8-201ENST00000250495 PNMA8AQ86V59 439 aaPredicted RBP27.39■■□□□ 1.98
NEDD8-201ENST00000250495 CREBZFQ9NS37 354 aa27.39■■□□□ 1.98
NEDD8-201ENST00000250495 ATP6V0A2Q9Y487 856 aa27.39■■□□□ 1.98
NEDD8-201ENST00000250495 ANKRD36CQ5JPF3 1778 aa27.38■■□□□ 1.97
NEDD8-201ENST00000250495 ANKRD13DQ6ZTN6 518 aa27.38■■□□□ 1.97
NEDD8-201ENST00000250495 PLBD2Q8NHP8 589 aa27.38■■□□□ 1.97
NEDD8-201ENST00000250495 VPS33BQ9H267 617 aa27.38■■□□□ 1.97
NEDD8-201ENST00000250495 CLEC11AQ9Y240 323 aa27.38■■□□□ 1.97
NEDD8-201ENST00000250495 SH3TC1Q8TE82 1336 aa27.38■■□□□ 1.97
NEDD8-201ENST00000250495 HCLS1P14317 486 aaPredicted RBP27.37■■□□□ 1.97
NEDD8-201ENST00000250495 CALD1Q05682 793 aaKnown RBP27.37■■□□□ 1.97
NEDD8-201ENST00000250495 DUSP27Q5VZP5 1158 aa27.37■■□□□ 1.97
NEDD8-201ENST00000250495 HYPKQ9NX55 129 aa27.37■■□□□ 1.97
NEDD8-201ENST00000250495 ABCC4O15439 1325 aa27.37■■□□□ 1.97
NEDD8-201ENST00000250495 APAF1O14727 1248 aa27.36■■□□□ 1.97
NEDD8-201ENST00000250495 MBIPQ9NS73 344 aa27.36■■□□□ 1.97
NEDD8-201ENST00000250495 DDX46Q7L014 1031 aaKnown RBP27.35■■□□□ 1.97
NEDD8-201ENST00000250495 SP8Q8IXZ3 490 aa27.35■■□□□ 1.97
NEDD8-201ENST00000250495 SUPT20HQ8NEM7 779 aa27.35■■□□□ 1.97
NEDD8-201ENST00000250495 GJA3Q9Y6H8 435 aa27.35■■□□□ 1.97
NEDD8-201ENST00000250495 ZNF853P0CG23 659 aa27.34■■□□□ 1.97
NEDD8-201ENST00000250495 NIM1KQ8IY84 436 aa27.34■■□□□ 1.97
NEDD8-201ENST00000250495 PASKQ96RG2 1323 aa27.34■■□□□ 1.97
NEDD8-201ENST00000250495 PPIP5K2O43314 1243 aa27.33■■□□□ 1.97
NEDD8-201ENST00000250495 LMOD1P29536 600 aaPredicted RBP27.33■■□□□ 1.97
NEDD8-201ENST00000250495 GNAI1P63096 354 aa27.33■■□□□ 1.97
NEDD8-201ENST00000250495 IFT57Q9NWB7 429 aa27.33■■□□□ 1.97
NEDD8-201ENST00000250495 ITGBL1O95965 494 aaPredicted RBP27.32■■□□□ 1.96
NEDD8-201ENST00000250495 ISCA1Q9BUE6 129 aa27.32■■□□□ 1.96
NEDD8-201ENST00000250495 GRAPQ13588 217 aa27.31■■□□□ 1.96
NEDD8-201ENST00000250495 SLC51AQ86UW1 340 aa27.31■■□□□ 1.96
NEDD8-201ENST00000250495 MPNDQ8N594 471 aa27.31■■□□□ 1.96
NEDD8-201ENST00000250495 GRAPLQ8TC17 118 aaPredicted RBP27.31■■□□□ 1.96
NEDD8-201ENST00000250495 RTFDC1Q9BY42 306 aaPredicted RBP27.31■■□□□ 1.96
NEDD8-201ENST00000250495 DPP8Q6V1X1 898 aaPredicted RBP27.3■■□□□ 1.96
NEDD8-201ENST00000250495 COL4A5P29400 1685 aa27.3■■□□□ 1.96
NEDD8-201ENST00000250495 AOC3Q16853 763 aa27.29■■□□□ 1.96
NEDD8-201ENST00000250495 TMC4Q7Z404 712 aa27.29■■□□□ 1.96
NEDD8-201ENST00000250495 CNTROBQ8N137 903 aa27.29■■□□□ 1.96
NEDD8-201ENST00000250495 MKRN1Q9UHC7 482 aaKnown RBP27.29■■□□□ 1.96
NEDD8-201ENST00000250495 LAMB2P55268 1798 aa27.28■■□□□ 1.96
NEDD8-201ENST00000250495 TMEM88BA6NKF7 163 aa27.28■■□□□ 1.96
NEDD8-201ENST00000250495 ATP5J2-PTCD1G3V325 749 aa27.28■■□□□ 1.96
NEDD8-201ENST00000250495 TRIM28Q13263 835 aaKnown RBP27.28■■□□□ 1.96
NEDD8-201ENST00000250495 CHMP4AQ9BY43 222 aa27.28■■□□□ 1.96
NEDD8-201ENST00000250495 FAM89AQ96GI7 184 aa27.27■■□□□ 1.96
NEDD8-201ENST00000250495 ZNRF3Q9ULT6 936 aa27.27■■□□□ 1.96
NEDD8-201ENST00000250495 HSPA1AP0DMV8 641 aaKnown RBP27.26■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms