RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 TMED10P49755 219 aaKnown RBP13.5□□□□□ -0.25
VRK3-212ENST00000596814 PNLIPRP2P54317 469 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 CHAF1BQ13112 559 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 ZNF141Q15928 474 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 GLIPR1L2Q4G1C9 344 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 EIPR1Q53HC9 387 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 DCAF10Q5QP82 559 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 PDZK1Q5T2W1 519 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 ZNF836Q6ZNA1 936 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 SLC5A8Q8N695 610 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 ZNF248Q8NDW4 579 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 OIT3Q8WWZ8 545 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 RSPO3Q9BXY4 272 aaPredicted RBP13.5□□□□□ -0.25
VRK3-212ENST00000596814 HOXD1Q9GZZ0 328 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 IL1RAPQ9NPH3 570 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 SH3GLB1Q9Y371 365 aa13.5□□□□□ -0.25
VRK3-212ENST00000596814 AKAP13Q12802 2813 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 ZNF354AO60765 605 aaPredicted RBP13.49□□□□□ -0.25
VRK3-212ENST00000596814 ABCB7O75027 752 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 ITGA10O75578 1167 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 UTS2O95399 124 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 FABP3P05413 133 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 CYP4B1P13584 511 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 EEF1A1P68104 462 aaKnown RBP13.49□□□□□ -0.25
VRK3-212ENST00000596814 KCNC4Q03721 635 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 GRAMD1BQ3KR37 738 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 ATP1A1-AS1Q5TC04 95 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 RNF220Q5VTB9 566 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 ZDHHC21Q8IVQ6 265 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 PQLC1Q8N2U9 271 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 SLC15A4Q8N697 577 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 ZNF527Q8NB42 609 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 THAP4Q8WY91 577 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 RASL10BQ96S79 203 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 UBQLN4Q9NRR5 601 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 KLHL28Q9NXS3 571 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 FLRT3Q9NZU0 649 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 NKX1-2Q9UD57 310 aaPredicted RBP13.49□□□□□ -0.25
VRK3-212ENST00000596814 SLC9A8Q9Y2E8 581 aa13.49□□□□□ -0.25
VRK3-212ENST00000596814 CLDN24A6NM45 220 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 ZNF891A8MT65 544 aaPredicted RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 hCG_2039718K7EN88 272 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 SCDO00767 359 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 TLX3O43711 291 aaPredicted RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 ICOSLGO75144 302 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 UGT2B11O75310 529 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 OXSR1O95747 527 aaPredicted RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 EPPINO95925 133 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 LGI1O95970 557 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 PRKAR1AP10644 381 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 HPGDP15428 266 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 NAGAP17050 411 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 WT1P19544 449 aaPredicted RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 OR1E2P47887 323 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 VLDLRP98155 873 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 AIMP2Q13155 320 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 EFR3AQ14156 821 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 MRPL2Q5T653 305 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 FCRLBQ6BAA4 426 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 JMJD6Q6NYC1 403 aaPredicted RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 ERMP1Q7Z2K6 904 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 COMTD1Q86VU5 262 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 RPS19BP1Q86WX3 136 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 CARM1Q86X55 608 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 ARMC10Q8N2F6 343 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 CLEC1AQ8NC01 280 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 OR4C3Q8NH37 302 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 SNIP1Q8TAD8 396 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 BRIX1Q8TDN6 353 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 APOBEC4Q8WW27 367 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 LRTOMTQ8WZ04 291 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 THOC3Q96J01 351 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 PKP2Q99959 881 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 CDCP1Q9H5V8 836 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 ARMC7Q9H6L4 198 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 ATP13A2Q9NQ11 1180 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 YARS2Q9Y2Z4 477 aaKnown RBP13.48□□□□□ -0.25
VRK3-212ENST00000596814 CHST2Q9Y4C5 530 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 DOCK10Q96BY6 2186 aa13.48□□□□□ -0.25
VRK3-212ENST00000596814 M0R3H8 397 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 NKX2-8O15522 239 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 KLK10O43240 276 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 IFNW1P05000 195 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 FBXO45P0C2W1 286 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 FASP25445 335 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 RNF144AP50876 292 aaPredicted RBP13.47□□□□□ -0.25
VRK3-212ENST00000596814 MLF1P58340 268 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 FGFBP1Q14512 234 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 NRF1Q16656 503 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 DESI1Q6ICB0 168 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 H3F3CQ6NXT2 135 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 LYPD8Q6UX82 237 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 PIWIL3Q7Z3Z3 882 aaKnown RBP13.47□□□□□ -0.25
VRK3-212ENST00000596814 CLIP4Q8N3C7 705 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 SIRT6Q8N6T7 355 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 VANGL1Q8TAA9 524 aaPredicted RBP13.47□□□□□ -0.25
VRK3-212ENST00000596814 C7orf34Q96L11 122 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 ARHGDIGQ99819 225 aa13.47□□□□□ -0.25
VRK3-212ENST00000596814 ZBTB20Q9HC78 741 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms