RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SLC25A3Q00325 362 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 LIPEQ05469 1076 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 C17orf67Q0P5P2 114 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 KLRB1Q12918 225 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 ZNF169Q14929 603 aaPredicted RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 LARS2Q15031 903 aaKnown RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 GPR68Q15743 365 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 INAQ16352 499 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 SYPL1Q16563 259 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 VMACQ2NL98 169 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 RABL3Q5HYI8 236 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 RPUSD3Q6P087 351 aaKnown RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 C8orf82Q6P1X6 216 aaPredicted RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 BNC2Q6ZN30 1099 aaPredicted RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 Q6ZS92 163 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 PATL1Q86TB9 770 aaKnown RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 CALHM3Q86XJ0 350 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 AMER2Q8N7J2 671 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 PSD4Q8NDX1 1056 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 MDS2Q8NDY4 140 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 OR2T12Q8NG77 320 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 OR10G3Q8NGC4 313 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 OR5M3Q8NGP4 307 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 SLC26A7Q8TE54 656 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 SLC38A5Q8WUX1 472 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 RASSF5Q8WWW0 418 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 HGDQ93099 445 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 PNPLA2Q96AD5 504 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 OTUB1Q96FW1 271 aaPredicted RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 ZNF583Q96ND8 569 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 KCTD14Q9BQ13 255 aaPredicted RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 FAM173AQ9BQD7 235 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 SLC39A3Q9BRY0 314 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 BTBD10Q9BSF8 475 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 ZNF350Q9GZX5 532 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 EVA1AQ9H8M9 152 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 KLRF1Q9NZS2 232 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 TMEM181Q9P2C4 612 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 ABCD2Q9UBJ2 740 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 PRDM4Q9UKN5 801 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 BOKQ9UMX3 212 aaPredicted RBP8.48□□□□□ -1.05
LDLR-210ENST00000559340 B3GNT3Q9Y2A9 372 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 DTNAQ9Y4J8 743 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 KCNE3Q9Y6H6 103 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 LAMA5O15230 3695 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 SPTA1P02549 2419 aa8.48□□□□□ -1.05
LDLR-210ENST00000559340 PRORSD1PA6NEY8 169 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ALG1L2C9J202 215 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 GTPBP1O00178 669 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 NDUFB5O43674 189 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 NME2P1O60361 137 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 FADS1O60427 444 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ZNF354AO60765 605 aaPredicted RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 ICOSLGO75144 302 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 C1QL1O75973 258 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 NEURL1O76050 574 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 PGM3O95394 542 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 PRB1P04280 392 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 HSD17B1P14061 328 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 IL7RP16871 459 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 NME2P22392 152 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 MSX1P28360 303 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 EVI2BP34910 448 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 CASP3P42574 277 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 MASP1P48740 699 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 CHRNEQ04844 493 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 SELPLGQ14242 412 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ZNF141Q15928 474 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 GRAMD1BQ3KR37 738 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 CCNJQ5T5M9 372 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ZNF468Q5VIY5 522 aaPredicted RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 SPINK14Q6IE38 97 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 TYW3Q6IPR3 259 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 RINLQ6ZS11 566 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ZNF605Q86T29 641 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 IFNEQ86WN2 208 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 CMIPQ8IY22 773 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 MICU2Q8IYU8 434 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 RBMXL3Q8N7X1 1067 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 ANKFN1Q8N957 763 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 RBM15BQ8NDT2 890 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 NFKBIDQ8NI38 313 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 POP5Q969H6 163 aaKnown RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 SCMH1Q96GD3 660 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 TMEM19Q96HH6 336 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 SIGLEC12Q96PQ1 595 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 TREX2Q9BQ50 279 aaPredicted RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 DOHHQ9BU89 302 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 OSBPL11Q9BXB4 747 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ANGPTL4Q9BY76 406 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 MMADHCQ9H3L0 296 aaPredicted RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 MUC13Q9H3R2 512 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ALG2Q9H553 416 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 IKZF5Q9H5V7 419 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 SH2D2AQ9NP31 389 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ZNF71Q9NQZ8 489 aaPredicted RBP8.47□□□□□ -1.05
LDLR-210ENST00000559340 CMTM6Q9NX76 183 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 ANKRD10Q9NXR5 420 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 TAS2R1Q9NYW7 299 aa8.47□□□□□ -1.05
LDLR-210ENST00000559340 B4GALT7Q9UBV7 327 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms