RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 PRODHO43272 600 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 EGFP01133 1207 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 APOC3P02656 99 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 GNSP15586 552 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 IGFALSP35858 605 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 EIF1AXP47813 144 aaKnown RBP9.39□□□□□ -0.91
TRAF1-202ENST00000540010 ZNF33BQ06732 778 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 SMCO1Q147U7 214 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 KLHL26Q53HC5 615 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 BCDIN3DQ7Z5W3 292 aaKnown RBP9.39□□□□□ -0.91
TRAF1-202ENST00000540010 SYNPOQ8N3V7 929 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 SDR16C5Q8N3Y7 309 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 DNAJC22Q8N4W6 341 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 OR4K14Q8NGD5 310 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 NEK7Q8TDX7 302 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 NECTIN4Q96NY8 510 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 RAB11FIP5Q9BXF6 653 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 TMEM121BQ9BXQ6 578 aaPredicted RBP9.39□□□□□ -0.91
TRAF1-202ENST00000540010 ARL6Q9H0F7 186 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 IKZF5Q9H5V7 419 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 BRF2Q9HAW0 419 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 PLEKHA1Q9HB21 404 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 IFT46Q9NQC8 304 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 ACSL5Q9ULC5 683 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 PLEKHA6Q9Y2H5 1048 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 ITGAMP11215 1152 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 CHMP24386 653 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 GABRA3P34903 492 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 PCGF2P35227 344 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 TAS2R38P59533 333 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 ARFRP1Q13795 201 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 CTU2Q2VPK5 515 aaKnown RBP9.39□□□□□ -0.91
TRAF1-202ENST00000540010 TMEM184AQ6ZMB5 413 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 RNF165Q6ZSG1 346 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 LAX1Q8IWV1 398 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 GDPD1Q8N9F7 314 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 ZNF740Q8NDX6 193 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 WDR20Q8TBZ3 569 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 LINC00615Q96LM1 132 aaPredicted RBP9.39□□□□□ -0.91
TRAF1-202ENST00000540010 SAMD8Q96LT4 415 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 EPYCQ99645 322 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 SPATA9Q9BWV2 254 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 HPF1Q9NWY4 346 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 CLEC1BQ9P126 229 aa9.39□□□□□ -0.91
TRAF1-202ENST00000540010 RBM7Q9Y580 266 aaKnown RBP9.39□□□□□ -0.91
TRAF1-202ENST00000540010 TPRP12270 2363 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 TEX13CA0A0J9YWL9 993 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 NUPL2O15504 423 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 KCNK5O95279 499 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 ALG11Q2TAA5 492 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 HSD17B12Q53GQ0 312 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 TMEM196Q5HYL7 178 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 POGLUT1Q8NBL1 392 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 BBS10Q8TAM1 723 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 DNAJA4Q8WW22 397 aaPredicted RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 NSMAFQ92636 917 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 PMM1Q92871 262 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 SLC22A18Q96BI1 424 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 NIPSNAP1Q9BPW8 284 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 OR10A4Q9H209 315 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 OR52A5Q9H2C5 316 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 UPB1Q9UBR1 384 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 FBXL21Q9UKT6 434 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 PPT2Q9UMR5 302 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 NDRG2Q9UN36 371 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 TRPM6Q9BX84 2022 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 CLDN24A6NM45 220 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 LILRB5O75023 590 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 GABARAPO95166 117 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 AGR2O95994 175 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 RENP00797 406 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 HMGN2P05204 90 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 H2AFB2P0C5Z0 115 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 PGAM2P15259 253 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 ZNF91Q05481 1191 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 SYPL1Q16563 259 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 TATDN3Q17R31 274 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 WASH2PQ6VEQ5 465 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 FTMTQ8N4E7 242 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 OR2L5Q8NG80 312 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 OR4K13Q8NH42 304 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 SETD7Q8WTS6 366 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 TESCQ96BS2 214 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 CCDC120Q96HB5 630 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 RHNO1Q9BSD3 238 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 PNO1Q9NRX1 252 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 MGAT4CQ9UBM8 478 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 MRTO4Q9UKD2 239 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 PCDHGA2Q9Y5H1 932 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 K7EQS6 105 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 HPGDSO60760 199 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 GASTP01350 101 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 AK4P27144 223 aaPredicted RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 EPHA2P29317 976 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 CRYZQ08257 329 aaKnown RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 FLYWCH1Q4VC44 716 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 MSANTD1Q6ZTZ1 278 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 ENTHD1Q8IYW4 607 aa9.38□□□□□ -0.91
TRAF1-202ENST00000540010 INO80EQ8NBZ0 244 aaPredicted RBP9.38□□□□□ -0.91
TRAF1-202ENST00000540010 OR6N2Q8NGY6 317 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms