RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 NLGN4YQ8NFZ3 816 aaPredicted RBP19.41■□□□□ 0.7
VPS28-208ENST00000527797 TP53INP1Q96A56 240 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 EFHD2Q96C19 240 aaPredicted RBP19.41■□□□□ 0.7
VPS28-208ENST00000527797 LMF1Q96S06 567 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 HOXD1Q9GZZ0 328 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.41■□□□□ 0.7
VPS28-208ENST00000527797 RLIMQ9NVW2 624 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 FARSAQ9Y285 508 aaKnown RBP19.41■□□□□ 0.7
VPS28-208ENST00000527797 LYVE1Q9Y5Y7 322 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 PCNX2A6NKB5 2137 aa19.41■□□□□ 0.7
VPS28-208ENST00000527797 C7orf72A4D263 438 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 CLDN24A6NM45 220 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 NPIPB9F8W1W9 429 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 GADD45GO95257 159 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 PRKACGP22612 351 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 MMP11P24347 488 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 KRT20P35900 424 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 GK3PQ14409 553 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 PCOLCEQ15113 449 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 PDZK1Q5T2W1 519 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 OR8K3Q8NH51 312 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 NUBPLQ8TB37 319 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 RBM4BQ9BQ04 359 aaKnown RBP19.4■□□□□ 0.7
VPS28-208ENST00000527797 RBM4Q9BWF3 364 aaKnown RBP19.4■□□□□ 0.7
VPS28-208ENST00000527797 OSBPL10Q9BXB5 764 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 ZNF700Q9H0M5 742 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 ACER3Q9NUN7 267 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 PDP1Q9P0J1 537 aaPredicted RBP19.4■□□□□ 0.7
VPS28-208ENST00000527797 KCND3Q9UK17 655 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 TCFL5Q9UL49 500 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 HS3ST3B1Q9Y662 390 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 EP300Q09472 2414 aaPredicted RBP19.4■□□□□ 0.7
VPS28-208ENST00000527797 IGHV1-45A0A0A0MS14 117 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 TRBV11-1A0A0K0K1C0 115 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 FFAR1O14842 300 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 HPRP00739 348 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 UQCRBP14927 111 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 LCN1P31025 176 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 HMGA2P52926 109 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 RGS8P57771 180 aaPredicted RBP19.4■□□□□ 0.7
VPS28-208ENST00000527797 SMIM11AP58511 58 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 NPTX1Q15818 432 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 MRPL2Q5T653 305 aaKnown RBP19.4■□□□□ 0.7
VPS28-208ENST00000527797 SLC34A3Q8N130 599 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 ZNF614Q8N883 585 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 OR5L2Q8NGL0 311 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 OR52J3Q8NH60 311 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 DIO2Q92813 273 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 GABARAPL1Q9H0R8 117 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 EVA1AQ9H8M9 152 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 POLR1BQ9H9Y6 1135 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 USE1Q9NZ43 259 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 RHCGQ9UBD6 479 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 ACAD8Q9UKU7 415 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 RAB26Q9ULW5 256 aa19.4■□□□□ 0.7
VPS28-208ENST00000527797 MUC6Q6W4X9 2439 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 CDC14CA4D256 554 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 CDHR4A6H8M9 788 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 FRS3O43559 492 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 SEMA7AO75326 666 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 REM1O75628 298 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 GABREP78334 506 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 NHLH1Q02575 133 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 PLCXD2Q0VAA5 305 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 LAPTM4AQ15012 233 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 ZSWIM7Q19AV6 140 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 CMPK2Q5EBM0 449 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 COLEC12Q5KU26 742 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 WLSQ5T9L3 541 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 AMER2Q8N7J2 671 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 OR4C15Q8NGM1 316 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 OR4C3Q8NH37 302 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 PHF10Q8WUB8 498 aaKnown RBP19.39■□□□□ 0.69
VPS28-208ENST00000527797 OIT3Q8WWZ8 545 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 NR4A3Q92570 626 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 NAF1Q96HR8 494 aaKnown RBP19.39■□□□□ 0.69
VPS28-208ENST00000527797 PRRC1Q96M27 445 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 BARD1Q99728 777 aaKnown RBP19.39■□□□□ 0.69
VPS28-208ENST00000527797 FNDC11Q9BVV2 318 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 Q9H521 79 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 NMNAT1Q9HAN9 279 aaPredicted RBP19.39■□□□□ 0.69
VPS28-208ENST00000527797 SMURF2Q9HAU4 748 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 UBQLN4Q9NRR5 601 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 SMPD3Q9NY59 655 aaPredicted RBP19.39■□□□□ 0.69
VPS28-208ENST00000527797 A4GNTQ9UNA3 340 aa19.39■□□□□ 0.69
VPS28-208ENST00000527797 DLL1O00548 723 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 AP3D1O14617 1153 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 RAD1O60671 282 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 ZFAND5O76080 213 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 ALPLP05186 524 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 H1F0P07305 194 aaKnown RBP19.38■□□□□ 0.69
VPS28-208ENST00000527797 IL12BP29460 328 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 NRG3P56975 720 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 PPP2R2BQ00005 443 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 PIN1Q13526 163 aaPredicted RBP19.38■□□□□ 0.69
VPS28-208ENST00000527797 SSPNQ14714 243 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 EXT1Q16394 746 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 EXOC3L2Q2M3D2 409 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 CMIPQ8IY22 773 aa19.38■□□□□ 0.69
VPS28-208ENST00000527797 PRR22Q8IZ63 422 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms