RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 OR5M11Q96RB7 305 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 CCT8L2Q96SF2 557 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 SLC30A2Q9BRI3 323 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 TMEM121Q9BTD3 319 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 TPPP3Q9BW30 176 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 POLR3FQ9H1D9 316 aaPredicted RBP3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 RIBC2Q9H4K1 309 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 EHFQ9NZC4 300 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 TMOD2Q9NZR1 351 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 SLC2A6Q9UGQ3 507 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 CYTH4Q9UIA0 394 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 CRLS1Q9UJA2 301 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 ATP6V0A2Q9Y487 856 aa3.09□□□□□ -1.91
HMGB1P28-201ENST00000507778 ZSCAN5BA6NJL1 495 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 FAM220BPB1ANY3 271 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 CLDN5O00501 218 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 NOL4O94818 638 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 DUSP14O95147 198 aaKnown RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 ASNSP08243 561 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 HSPA5P11021 654 aaKnown RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 GNPDA1P46926 289 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 CXCL6P80162 114 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 BDH1Q02338 343 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 ZNF239Q16600 458 aaKnown RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 TEX44Q53QW1 395 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 NCR3LG1Q68D85 454 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 VITQ6UXI7 678 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 ANKRD37Q7Z713 158 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 GPD1LQ8N335 351 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 CSNK1A1LQ8N752 337 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 KLHL30-AS1Q8NEE0 82 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 CCDC26Q8TAB7 109 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 TM2D1Q9BX74 207 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 CALHM2Q9HA72 323 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 FARSBQ9NSD9 589 aaKnown RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 MRPL39Q9NYK5 338 aaKnown RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 DPM3Q9P2X0 92 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 ZNF107Q9UII5 783 aaPredicted RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 BLOC1S6Q9UL45 172 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 PCNX3Q9H6A9 2034 aa3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 COL2A1P02458 1487 aaPredicted RBP3.08□□□□□ -1.92
HMGB1P28-201ENST00000507778 PPIAL4CA0A0B4J2A2 164 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 IGHV3-35A0A0C4DH35 117 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 PHOX2AO14813 284 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 ANGPT2O15123 496 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 PCCBP05166 539 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 KRT8P05787 483 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 HBQ1P09105 142 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 PPIAL4GP0DN37 164 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 EPB41P11171 864 aaKnown RBP3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 PTBP1P26599 531 aaKnown RBP eCLIP3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 GDF1P27539 372 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 ACADVLP49748 655 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 ERVPABLB-1P60509 514 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 RGS1Q08116 209 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 CD47Q08722 323 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 ASAH1Q13510 395 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SERTAD2Q14140 314 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 KCNJ11Q14654 390 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 TGIF1Q15583 401 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 CHI3L2Q15782 390 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 TPD52L1Q16890 204 aaPredicted RBP3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 CCDC57Q2TAC2 916 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 QRICH1Q2TAL8 776 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 USH1GQ495M9 461 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SLC22A10Q63ZE4 541 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SPINK14Q6IE38 97 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 OR8G2PQ6IF36 304 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 CGB2Q6NT52 195 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 Q6ZR54 194 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 GRAMD2AQ8IUY3 354 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 ADAMTS16Q8TE57 1224 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 GTSF1Q8WW33 167 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 IL1F10Q8WWZ1 152 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 THRSPQ92748 146 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 MYLPFQ96A32 169 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 DTNBP1Q96EV8 351 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SDSLQ96GA7 329 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 C4orf36Q96KX1 117 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SIGLEC12Q96PQ1 595 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 GLT8D2Q9H1C3 349 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 RHOJQ9H4E5 214 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 PALMDQ9NP74 551 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 ABCD2Q9UBJ2 740 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SPACA6W5XKT8 324 aa3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 SF3B1O75533 1304 aaKnown RBP eCLIP3.07□□□□□ -1.92
HMGB1P28-201ENST00000507778 A0A1W2PQ72 361 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 GSAPA4D1B5 854 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 ERI2A8K979 691 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 E9PLD3 99 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 TSC22D2O75157 780 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 SRSF10O75494 262 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 OPN1LWP04000 364 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 CLUP10909 449 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 IGHV1-2P23083 117 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 ATP5A1P25705 553 aaKnown RBP3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 NF2P35240 595 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 SOX6P35712 828 aa3.06□□□□□ -1.92
HMGB1P28-201ENST00000507778 MDH2P40926 338 aaKnown RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms