RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 VPS26BQ4G0F5 336 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 SLC9B1Q4ZJI4 515 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 SPANXN4Q5MJ08 99 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 CDC73Q6P1J9 531 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 OLIG3Q7RTU3 272 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 COX18Q8N8Q8 333 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 GATSQ8NAP1 163 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 OR4K17Q8NGC6 315 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 ASB5Q8WWX0 329 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 ZNF75CPQ92670 426 aaPredicted RBP16.44■□□□□ 0.22
COL9A3-214ENST00000490398 MARK4Q96L34 752 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 PRPF18Q99633 342 aaKnown RBP16.44■□□□□ 0.22
COL9A3-214ENST00000490398 G6PC3Q9BUM1 346 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 DPY30Q9C005 99 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 GIN1Q9NXP7 522 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 DKKL1Q9UK85 242 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 ABCG2Q9UNQ0 655 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 PCDHGB3Q9Y5G1 929 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 ABCA12Q86UK0 2595 aa16.44■□□□□ 0.22
COL9A3-214ENST00000490398 PHF3Q92576 2039 aaKnown RBP16.43■□□□□ 0.22
COL9A3-214ENST00000490398 NPIPA5A0A0B4J1W7 369 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 SHISA8B8ZZ34 492 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 NPIPA7E9PJI5 369 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 HDAC3O15379 428 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 OXSR1O95747 527 aaPredicted RBP16.43■□□□□ 0.22
COL9A3-214ENST00000490398 EPPINO95925 133 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 NPIPA8P0DM63 369 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 DDX5P17844 614 aaKnown RBP16.43■□□□□ 0.22
COL9A3-214ENST00000490398 SOAT1P35610 550 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 LHX2P50458 406 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 CASP9P55211 416 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 SRYQ05066 204 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.43■□□□□ 0.22
COL9A3-214ENST00000490398 LSM12Q3MHD2 195 aaKnown RBP16.43■□□□□ 0.22
COL9A3-214ENST00000490398 RIPPLY2Q5TAB7 128 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 ATG16L1Q676U5 607 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 OGFOD2Q6N063 350 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 ZCCHC12Q6PEW1 402 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 IFNEQ86WN2 208 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 ZNF295-AS1Q8N0V1 137 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 NATD1Q8N6N6 113 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 OR5D16Q8NGK9 328 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 CHMP6Q96FZ7 201 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 ATP6V1G3Q96LB4 118 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 TRIB1Q96RU8 372 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 NPAS1Q99742 590 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 TUBA1CQ9BQE3 449 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 PIGUQ9H490 435 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 CHST11Q9NPF2 352 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 AIG1Q9NVV5 245 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 MRTO4Q9UKD2 239 aaKnown RBP16.43■□□□□ 0.22
COL9A3-214ENST00000490398 CACNA1CQ13936 2221 aa16.43■□□□□ 0.22
COL9A3-214ENST00000490398 AHRRA9YTQ3 701 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 H0YC42 278 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 OIP5O43482 229 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 CPSF4O95639 269 aaKnown RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 ACTL6AO96019 429 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 HOXD4P09016 255 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 DGKQP52824 942 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 PSMD4P55036 377 aaKnown RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 TPD52P55327 224 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 DSCR4P56555 118 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 CLDN15P56746 228 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 POU6F2P78424 691 aaPredicted RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 CD226Q15762 336 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 POMZP3Q6PJE2 187 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 MCEMP1Q8IX19 187 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 C9orf106Q8NAJ2 232 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 ACBD4Q8NC06 268 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 OR8J2Q8NGG1 315 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 OR56A1Q8NGH5 318 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 RAB3IL1Q8TBN0 382 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 SFXN5Q8TD22 340 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 SFXN2Q96NB2 322 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 OR52B2Q96RD2 323 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 SH3GL2Q99962 352 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 BTBD2Q9BX70 525 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 ACTRT3Q9BYD9 372 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 TBL1XR1Q9BZK7 514 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 DUSP22Q9NRW4 184 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 MRPS18CQ9Y3D5 142 aaKnown RBP16.42■□□□□ 0.22
COL9A3-214ENST00000490398 GPR45Q9Y5Y3 372 aa16.42■□□□□ 0.22
COL9A3-214ENST00000490398 CACNA1DQ01668 2161 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 IGLV3-32A0A0A0MS00 114 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 ALG1L2C9J202 215 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 RNASET2O00584 256 aaKnown RBP16.41■□□□□ 0.22
COL9A3-214ENST00000490398 SASH3O75995 380 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 COX6B1P14854 86 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 CPN1P15169 458 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 HK1P19367 917 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 TBXA2RP21731 343 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 CEACAM8P31997 349 aaPredicted RBP16.41■□□□□ 0.22
COL9A3-214ENST00000490398 PTGER4P35408 488 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 ZFP36L2P47974 494 aaKnown RBP16.41■□□□□ 0.22
COL9A3-214ENST00000490398 AGFG1P52594 562 aaKnown RBP16.41■□□□□ 0.22
COL9A3-214ENST00000490398 CLDN18P56856 261 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.41■□□□□ 0.223e-11■■□□□ 11.4
COL9A3-214ENST00000490398 NSUN5P2Q63ZY6 315 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 ARSKQ6UWY0 536 aa16.41■□□□□ 0.22
COL9A3-214ENST00000490398 C6orf120Q7Z4R8 191 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms