RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SHISA8B8ZZ34 492 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 EEF1E1-BLOC1S5C9J1V9 151 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 SCAMP2O15127 329 aaKnown RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 EEF1E1O43324 174 aaKnown RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 ITM2AO43736 263 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 LYPLA1O75608 230 aaPredicted RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 KCNK2O95069 426 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 ZWINTO95229 277 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 SLU7O95391 586 aaKnown RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 ANGPTL1O95841 491 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 CHEK2O96017 543 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 HK1P19367 917 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 GPC1P35052 558 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 MANFP55145 182 aaKnown RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 MLC1Q15049 377 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 ZNHIT3Q15649 155 aaPredicted RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 CDRT4Q8N9R6 151 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 LINC01560Q8TB33 94 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 GPR151Q8TDV0 419 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 FAM120BQ96EK7 910 aaKnown RBP12.73□□□□□ -0.37
UPF3A-204ENST00000475218 TM9SF2Q99805 663 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 C1orf50Q9BV19 199 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 C20orf27Q9GZN8 174 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 MED13LQ71F56 2210 aa12.73□□□□□ -0.37
UPF3A-204ENST00000475218 NUP214P35658 2090 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-204ENST00000475218 A0A1W2PNV4 684 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 A6NNC1 897 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 SKAP2O75563 359 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-204ENST00000475218 OXSR1O95747 527 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-204ENST00000475218 GCKP35557 465 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 SERPINB5P36952 375 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 ASMTP46597 345 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 CLDN20P56880 219 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 MPP2Q14168 576 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 DAZAP2Q15038 168 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-204ENST00000475218 FIGNL1Q6PIW4 674 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 RIMKLAQ8IXN7 391 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 UBQLNLQ8IYU4 475 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 KRTCAP2Q8N6L1 136 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 ZFP28Q8NHY6 868 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 PSMA8Q8TAA3 256 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 FAM222BQ8WU58 562 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 FIG4Q92562 907 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 SLC9A6Q92581 669 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 PPP3R2Q96LZ3 170 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 MS4A4EQ96PG1 132 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 YIPF4Q9BSR8 244 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 SFXN3Q9BWM7 321 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 EML4Q9HC35 981 aaKnown RBP12.72□□□□□ -0.37
UPF3A-204ENST00000475218 GALNT8Q9NY28 637 aa12.72□□□□□ -0.37
UPF3A-204ENST00000475218 FOXD3Q9UJU5 478 aaPredicted RBP12.72□□□□□ -0.37
UPF3A-204ENST00000475218 TTC36A6NLP5 189 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 ALG1L2C9J202 215 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 EMC8O43402 210 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 GMFGO60234 142 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 NGFRP08138 427 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 GANABQ14697 944 aaKnown RBP12.71□□□□□ -0.37
UPF3A-204ENST00000475218 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.71□□□□□ -0.37
UPF3A-204ENST00000475218 TNFAIP8L3Q5GJ75 292 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 CCNJQ5T5M9 372 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 RAET1LQ5VY80 246 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 LUZP2Q86TE4 346 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 GGNQ86UU5 652 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 CEP70Q8NHQ1 597 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 ZBTB9Q96C00 473 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 COQ8BQ96D53 544 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 ZFP3Q96NJ6 502 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 PARD6BQ9BYG5 372 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 CXorf36Q9H7Y0 433 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 SDHAF3Q9NRP4 125 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 ABCA4P78363 2273 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 VPS13CQ709C8 3753 aa12.71□□□□□ -0.37
UPF3A-204ENST00000475218 A8MXE2 369 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 KCNH1O95259 989 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 HMGN2P05204 90 aaKnown RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 DHRS4L1P0CG22 281 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 TBXA2RP21731 343 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 PSMA4P25789 261 aaKnown RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 SERPINB4P48594 390 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 IST1P53990 364 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 DIO3P55073 304 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 CBX1P83916 185 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 SORDQ00796 357 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 IL23RQ5VWK5 629 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 VWA1Q6PCB0 445 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 CDC20BQ86Y33 519 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 GRAMD2AQ8IUY3 354 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 GATSQ8NAP1 163 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 STARD4Q96DR4 205 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 ZNF845Q96IR2 970 aaPredicted RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 RBM24Q9BX46 236 aaKnown RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 POLDIP3Q9BY77 421 aaKnown RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 TBL1XR1Q9BZK7 514 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 CLEC4MQ9H2X3 399 aaPredicted RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 MRTO4Q9UKD2 239 aaKnown RBP12.71□□□□□ -0.38
UPF3A-204ENST00000475218 KCNE3Q9Y6H6 103 aa12.71□□□□□ -0.38
UPF3A-204ENST00000475218 A0A1W2PPR1 153 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 EPXP11678 715 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 PEPDP12955 493 aa12.7□□□□□ -0.38
UPF3A-204ENST00000475218 PEX19P40855 299 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms