RNA–Protein interactions for RNA: ENST00000470463.1

SND1-208, Transcript of staphylococcal nuclease and tudor domain containing 1, human

TSL 4

Gene SND1, Length 530 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SND1-208	ENST00000470463	PNO1	Q9NRX1	252 aa	Known RBP	10.19	□□□□□ -0.78
SND1-208	ENST00000470463	SCN3B	Q9NY72	215 aa		10.19	□□□□□ -0.78
SND1-208	ENST00000470463	C19orf25	Q9UFG5	118 aa	Predicted RBP	10.19	□□□□□ -0.78
SND1-208	ENST00000470463	MKL2	Q9ULH7	1088 aa		10.19	□□□□□ -0.78
SND1-208	ENST00000470463	SLC35A3	Q9Y2D2	325 aa		10.19	□□□□□ -0.78
SND1-208	ENST00000470463	GPR55	Q9Y2T6	319 aa	Predicted RBP	10.19	□□□□□ -0.78
SND1-208	ENST00000470463	TPRKB	Q9Y3C4	175 aa		10.19	□□□□□ -0.78
SND1-208	ENST00000470463	UNC13C	Q8NB66	2214 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	DCHS1	Q96JQ0	3298 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	MYOCOS	A0A1B0GUC4	107 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	TRAPPC13	A5PLN9	417 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	HTR3E	A5X5Y0	456 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	TRIM64C	A6NLI5	447 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463		B4E171	279 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463		E9PQ18	207 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	FOXD2	O60548	495 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	NME6	O75414	186 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CYP7B1	O75881	506 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	SEC24D	O94855	1032 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	IGKV3-11	P04433	115 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	HEXB	P07686	556 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	ADRB1	P08588	477 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	ZNF806	P0C7X5	589 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CT45A8	P0DMV1	189 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CT45A9	P0DMV2	189 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CDK4	P11802	303 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	OSM	P13725	252 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	KRT20	P35900	424 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	GGT2	P36268	569 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	ADH7	P40394	386 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	TSPAN7	P41732	249 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	SH3BGR	P55822	239 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	RAB15	P59190	212 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	ISL1	P61371	349 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	RPP38	P78345	283 aa	Known RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	IL5RA	Q01344	420 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	PIN1	Q13526	163 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CT45A2	Q5DJT8	189 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	C6orf141	Q5SZD1	244 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	MRPL2	Q5T653	305 aa	Known RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	ZNF613	Q6PF04	617 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	DGAT2L6	Q6ZPD8	337 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	SLC29A4	Q7RTT9	530 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	TMPRSS9	Q7Z410	1059 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	WDR53	Q7Z5U6	358 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	P3H2	Q8IVL5	708 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	PIGX	Q8TBF5	258 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	STT3B	Q8TCJ2	826 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	SLC7A13	Q8TCU3	470 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	SLC2A12	Q8TD20	617 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	GNPDA2	Q8TDQ7	276 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	ACOT11	Q8WXI4	607 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	PIK3R3	Q92569	461 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	DIO2	Q92813	273 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	HSPBAP1	Q96EW2	488 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	LCOR	Q96JN0	433 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	HS6ST2	Q96MM7	605 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CCNL2	Q96S94	520 aa	Predicted RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	BARD1	Q99728	777 aa	Known RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CDC6	Q99741	560 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	CMKLR1	Q99788	373 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	FUZ	Q9BT04	418 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	STRADB	Q9C0K7	418 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	VN1R1	Q9GZP7	353 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	WDR54	Q9H977	334 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	TMEM27	Q9HBJ8	222 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	HHATL	Q9HCP6	504 aa		10.18	□□□□□ -0.78
SND1-208	ENST00000470463	TPR	P12270	2363 aa	Known RBP	10.18	□□□□□ -0.78
SND1-208	ENST00000470463	EPG5	Q9HCE0	2579 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	TRBV4-1	A0A0J9YWV2	114 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	C2orf92	A0A1B0GVN3	265 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	GXYLT2	A0PJZ3	443 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	DCDC2B	A2VCK2	349 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	DPPA5	A6NC42	116 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	EFCAB7	A8K855	629 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	T	O15178	435 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	MITF	O75030	526 aa	Predicted RBP	10.17	□□□□□ -0.78
SND1-208	ENST00000470463	ZIC2	O95409	532 aa	Predicted RBP	10.17	□□□□□ -0.78
SND1-208	ENST00000470463	IL33	O95760	270 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	CLIC3	O95833	236 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	ANGPTL1	O95841	491 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	EPPIN	O95925	133 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	GAST	P01350	101 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	ZGLP1	P0C6A0	271 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	SMIM18	P0DKX4	95 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	HPGD	P15428	266 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	EEF1B2	P24534	225 aa	Known RBP	10.17	□□□□□ -0.78
SND1-208	ENST00000470463	CLK3	P49761	638 aa	Known RBP	10.17	□□□□□ -0.78
SND1-208	ENST00000470463	CRISP1	P54107	249 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	MC2R	Q01718	297 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	TARDBP	Q13148	414 aa	Known RBP eCLIP	10.17	□□□□□ -0.78	3e-7	■■■□□ 17.5
SND1-208	ENST00000470463	RAPSN	Q13702	412 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	LAPTM4A	Q15012	233 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	LPAL2	Q16609	132 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	ENTPD8	Q5MY95	495 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	CCNJ	Q5T5M9	372 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	C1orf189	Q5VU69	101 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	BROX	Q5VW32	411 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	PWWP2B	Q6NUJ5	590 aa		10.17	□□□□□ -0.78
SND1-208	ENST00000470463	C1orf94	Q6P1W5	598 aa		10.17	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms