RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CCNE2O96020 404 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 C8BP07358 591 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ITGB5P18084 799 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ATP5A1P25705 553 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CD27P26842 260 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 HLA-DMAP28067 261 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 OTX2P32243 289 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CA5AP35218 305 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 HMGCS2P54868 508 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RAP2BP61225 183 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PDZK1IP1Q13113 114 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MED21Q13503 144 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SERTAD2Q14140 314 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 KCNJ11Q14654 390 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GPNMBQ14956 572 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TRIP10Q15642 601 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 LRRC26Q2I0M4 334 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PRICKLE4Q2TBC4 344 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PTCHD3Q3KNS1 767 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GPR33Q49SQ1 333 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ATP13A5Q4VNC0 1218 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RAB41Q5JT25 222 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TREML2Q5T2D2 321 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 RSBN1Q5VWQ0 802 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 FIGLAQ6QHK4 219 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SH2D5Q6ZV89 423 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GDF7Q7Z4P5 450 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CLEC14AQ86T13 490 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ADGRG3Q86Y34 549 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GPALPP1Q8IXQ4 340 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 BOD1L2Q8IYS8 172 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 HS3ST5Q8IZT8 346 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 OR9K2Q8NGE7 335 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CXorf40AQ8TE69 158 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ARNTL2Q8WYA1 636 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 HAS1Q92839 578 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GCDHQ92947 438 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SLC46A1Q96NT5 459 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 OR14A2Q96R54 314 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PCYT2Q99447 389 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SERPINI1Q99574 410 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PCGF1Q9BSM1 259 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 NDC1Q9BTX1 674 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM208Q9BTX3 173 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PDCD10Q9BUL8 212 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 PHF7Q9BWX1 381 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SGPP1Q9BX95 441 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SLITRK2Q9H156 845 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 GSTO2Q9H4Y5 243 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ZNF768Q9H5H4 540 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 CCDC134Q9H6E4 229 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM185BQ9H7F4 350 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 FN3KRPQ9HA64 309 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MIOSQ9NXC5 875 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 MRPS17Q9Y2R5 130 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 ADAM18Q9Y3Q7 739 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 SAR1BQ9Y6B6 198 aa4.49□□□□□ -1.69
CCDC88A-209ENST00000456975 TTC28Q96AY4 2481 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CCDC187A0A096LP49 1063 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ISPDA4D126 451 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM189-UBE2V1I3L0A0 370 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ADAM12O43184 909 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 LCMT2O60294 686 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CREG1O75629 220 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KDM4BO94953 1096 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 AGFG2O95081 481 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MED26O95402 600 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 H6PDO95479 791 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 VIPP01282 170 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 NPSP0C0P6 89 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DAOP14920 347 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 GSTM3P21266 225 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 BGNP21810 368 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PSMB5P28074 263 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 NDUFS1P28331 727 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ERP29P30040 261 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CD6P30203 668 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 S100A7P31151 101 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 FMO3P31513 532 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 VIPR1P32241 457 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 DLSTP36957 453 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MMP12P39900 470 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 KIR2DL3P43628 341 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 NRIP1P48552 1158 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MMP15P51511 669 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ST8SIA6P61647 398 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 RPS15P62841 145 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 CSNK2A1P68400 391 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 RIPPLY1Q0D2K3 151 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TUBB3Q13509 450 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PTPRCAPQ14761 206 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PCLAFQ15004 111 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 XKR6Q5GH73 641 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 PCID2Q5JVF3 399 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 FBXW9Q5XUX1 488 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 ABLIM2Q6H8Q1 611 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 TMEM220Q6QAJ8 160 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 BTNL3Q6UXE8 466 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 MBOAT1Q6ZNC8 495 aa4.48□□□□□ -1.69
CCDC88A-209ENST00000456975 RRM2BQ7LG56 351 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms