RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 PTDSS1P48651 473 aaKnown RBP15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 TMED10P49755 219 aaKnown RBP15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 ATP12AP54707 1039 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 GRAMD1BQ3KR37 738 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 MRGPREQ86SM8 312 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 LILRA2Q8N149 483 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 DIO2Q92813 273 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 EME1Q96AY2 570 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 OMA1Q96E52 524 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF347Q96SE7 839 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 MMP25Q9NPA2 562 aa15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.81■□□□□ 0.12
CCDC28B-202ENST00000421922 WWP2O00308 870 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 SCDO00767 359 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 IGKV1D-16P01601 117 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 NID1P14543 1247 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 RPS4Y1P22090 263 aaKnown RBP15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 F8A1P23610 371 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 ABCD3P28288 659 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 IFNA8P32881 189 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 VHLP40337 213 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 RGS8P57771 180 aaPredicted RBP15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 VLDLRP98155 873 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 IL10RAQ13651 578 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 RTP5Q14D33 572 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 ZSWIM7Q19AV6 140 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 PDZK1Q5T2W1 519 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 DEF8Q6ZN54 512 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF836Q6ZNA1 936 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 PIWIL3Q7Z3Z3 882 aaKnown RBP15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF441Q8N8Z8 693 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 GPR32P1Q8NGA4 272 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 OIT3Q8WWZ8 545 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 IMMP1LQ96LU5 166 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 ADOQ96SZ5 270 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 REEP1Q9H902 201 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 UBQLN4Q9NRR5 601 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 P4HTMQ9NXG6 502 aa15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 MRPS18BQ9Y676 258 aaKnown RBP15.8■□□□□ 0.12
CCDC28B-202ENST00000421922 SAC3D1A6NKF1 404 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 H3BNH8 94 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 M0R3H8 397 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 TERTO14746 1132 aaKnown RBP15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ADAMDEC1O15204 470 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ABCB7O75027 752 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 UGT2B17O75795 530 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 LGI1O95970 557 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF23P17027 643 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ARHGDIAP52565 204 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 SPIBQ01892 262 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 EFR3AQ14156 821 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 RNF220Q5VTB9 566 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 OR2T5Q6IEZ7 315 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 HMBOX1Q6NT76 420 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ZAR1Q86SH2 424 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 DTX1Q86Y01 620 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 KBTBD2Q8IY47 623 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 TMEM102Q8N9M5 508 aaPredicted RBP15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 OR2T29Q8NH02 315 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ELP5Q8TE02 316 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ZG16BQ96DA0 208 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF300Q96RE9 604 aaPredicted RBP15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 LMF1Q96S06 567 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 EVA1AQ9H8M9 152 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 LIN28AQ9H9Z2 209 aaKnown RBP15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ABCG2Q9UNQ0 655 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 ENPP4Q9Y6X5 453 aa15.79■□□□□ 0.12
CCDC28B-202ENST00000421922 AP3D1O14617 1153 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 CASQ2O14958 399 aaPredicted RBP15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 UTS2O95399 124 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 PEX2P28328 305 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 CLK3P49761 638 aaKnown RBP15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 PNLIPRP2P54317 469 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 ZNF141Q15928 474 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 LRRC36Q1X8D7 754 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 MRPL2Q5T653 305 aaKnown RBP15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 TCTN3Q6NUS6 607 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 RANBP3LQ86VV4 465 aaPredicted RBP15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 CMIPQ8IY22 773 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 SLC5A8Q8N695 610 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 C7orf34Q96L11 122 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 C9orf16Q9BUW7 83 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 AMBRA1Q9C0C7 1298 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 KLHL4Q9C0H6 718 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 MYOTQ9UBF9 498 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 IL17BQ9UHF5 180 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 NPFFR2Q9Y5X5 522 aa15.78■□□□□ 0.12
CCDC28B-202ENST00000421922 TRABD2BA6NFA1 517 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 TMEM229AB2RXF0 380 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 PPM1BO75688 479 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 DIRAS1O95057 198 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 CYP4B1P13584 511 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 LIFP15018 202 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 RHCEP18577 417 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 EEF1A1P68104 462 aaKnown RBP15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 CAMK2BQ13554 666 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 ATP1A4Q13733 1029 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 MAPK14Q16539 360 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 NRF1Q16656 503 aa15.77■□□□□ 0.12
CCDC28B-202ENST00000421922 LPCAT4Q643R3 524 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms