RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 WDR55Q9H6Y2 383 aaPredicted RBP11.69□□□□□ -0.54
LINC00339-202ENST00000416769 LYARQ9NX58 379 aaKnown RBP11.69□□□□□ -0.54
LINC00339-202ENST00000416769 MCM8Q9UJA3 840 aa11.69□□□□□ -0.54
LINC00339-202ENST00000416769 EDARQ9UNE0 448 aa11.69□□□□□ -0.54
LINC00339-202ENST00000416769 STAB1Q9NY15 2570 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 GOLGA8QA0A0J9YX86 632 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 GOLGA8OA6NCC3 632 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 GOLGA8NF8WBI6 632 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 H0YC42 278 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 ERN1O75460 977 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 CBX7O95931 251 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 CPMP14384 443 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 NID1P14543 1247 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 PIK3R1P27986 724 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 EPHA3P29320 983 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 FEN1P39748 380 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 LHX2P50458 406 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 XKP51811 444 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 ARFIP2P53365 341 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 TPD52P55327 224 aaPredicted RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 TRA2BP62995 288 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 RAE1P78406 368 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 RCAN2Q14206 197 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 LSM12Q3MHD2 195 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 GALNTL6Q49A17 601 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 OGFOD2Q6N063 350 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 NOXRED1Q6NXP6 359 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 ZNF550Q7Z398 422 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 COMMD6Q7Z4G1 85 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 SPATA19Q7Z5L4 167 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 PIGWQ7Z7B1 504 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 NUDT13Q86X67 352 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 OR14L1PQ8NHC6 308 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 ZPLD1Q8TCW7 415 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 CTHRC1Q96CG8 243 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 THOC1Q96FV9 657 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 FCRL1Q96LA6 429 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 WFIKKN1Q96NZ8 548 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 ELAC2Q9BQ52 826 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 EBF4Q9BQW3 602 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 OSBPL11Q9BXB4 747 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 BRINP2Q9C0B6 783 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 OR2B2Q9GZK3 357 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 UBTD1Q9HAC8 227 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 RYDENQ9NUL5 291 aaKnown RBP11.68□□□□□ -0.54
LINC00339-202ENST00000416769 MAT2BQ9NZL9 334 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 DCTN4Q9UJW0 460 aa11.68□□□□□ -0.54
LINC00339-202ENST00000416769 A0A0G2JND7 137 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 A0A1W2PNV4 684 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 A8MXE2 369 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 PLOD2O00469 737 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 RCBTB2O95199 551 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 KLK1P06870 262 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 PRPS2P11908 318 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 CPN1P15169 458 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 LOXP28300 417 aaPredicted RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 MAPK1P28482 360 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 TIA1P31483 386 aaKnown RBP eCLIP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 GALNSP34059 522 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 GSTM5P46439 218 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 GFRA1P56159 465 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 CLDN18P56856 261 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 MRPS35P82673 323 aaKnown RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 PRICKLE4Q2TBC4 344 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 TRMT12Q53H54 448 aaKnown RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 CCNYL2Q5T2Q4 361 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 SHEQ5VZ18 495 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 METTL21CQ5VZV1 264 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 NXNQ6DKJ4 435 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 ZNF474Q6S9Z5 364 aaPredicted RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 YTHDF3Q7Z739 585 aaKnown RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 P3H2Q8IVL5 708 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 FNDC5Q8NAU1 212 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 PIK3IP1Q96FE7 263 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 OR52B2Q96RD2 323 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 CCT8L2Q96SF2 557 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 SECISBP2Q96T21 854 aaKnown RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 SFXN3Q9BWM7 321 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 TMEM120AQ9BXJ8 343 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 OPN3Q9H1Y3 402 aaPredicted RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 TCF7L2Q9NQB0 619 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 ASIC5Q9NY37 505 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 KLRF1Q9NZS2 232 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 BCAP29Q9UHQ4 241 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 CES1P1Q9UKY3 287 aa11.67□□□□□ -0.54
LINC00339-202ENST00000416769 EIF3LQ9Y262 564 aaKnown RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 WBP11Q9Y2W2 641 aaKnown RBP11.67□□□□□ -0.54
LINC00339-202ENST00000416769 PRAMEF25A6NGN4 478 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 CAPN14A8MX76 684 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 PCDH7O60245 1069 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 SNX3O60493 162 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 SMPD2O60906 423 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 GUCY1B2O75343 617 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 SMNDC1O75940 238 aaKnown RBP eCLIP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 FAM107AO95990 144 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 ACTL6AO96019 429 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 ANXA4P09525 319 aaPredicted RBP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 TMED10P49755 219 aaKnown RBP11.66□□□□□ -0.54
LINC00339-202ENST00000416769 CLDN15P56746 228 aa11.66□□□□□ -0.54
LINC00339-202ENST00000416769 NRG3P56975 720 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms