RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CDH20Q9HBT6 801 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 VNN3Q9NY84 501 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 VAPAQ9P0L0 249 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 LOC100509620A0A075B734 347 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 CD300LBA8K4G0 201 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 GMDSO60547 372 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 KCNK2O95069 426 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 CSF2P04141 144 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 CHRNB4P30926 498 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 PBX2P40425 430 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 PER3P56645 1201 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 RAB33AQ14088 237 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 RBMS2Q15434 407 aaKnown RBP5.77□□□□□ -1.49
SCN1A-203ENST00000409050 LRIT3Q3SXY7 679 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 SLC35D3Q5M8T2 416 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 MANEAQ5SRI9 462 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 NADSYN1Q6IA69 706 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 FOXRED2Q8IWF2 684 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 HUS1BQ8NHY5 278 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 GLYATL2Q8WU03 294 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 C3orf49Q96BT1 292 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 C7orf34Q96L11 122 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 OR8D2Q9GZM6 311 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 NMNAT1Q9HAN9 279 aaPredicted RBP5.77□□□□□ -1.49
SCN1A-203ENST00000409050 CUTCQ9NTM9 273 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 RIMS3Q9UJD0 308 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 NENFQ9UMX5 172 aa5.77□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM212A6NML5 194 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 M0QZQ0 153 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 B4GALT2O60909 372 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SYN1P17600 705 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 MSR1P21757 451 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TUBG1P23258 451 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GABRA5P31644 462 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CD79BP40259 229 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CX3CR1P49238 355 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HTD2P86397 168 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TLE4Q04727 773 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 MFGE8Q08431 387 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GPR19Q15760 415 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SGCAQ16586 387 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 AGAP7PQ5VUJ5 663 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 DPPA4Q7L190 304 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NKAIN3Q8N8D7 197 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SUMF2Q8NBJ7 301 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR56B1Q8NGI3 324 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR1J2Q8NGS2 313 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NT5C3BQ969T7 300 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 MMABQ96EY8 250 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 INTS14Q96SY0 518 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SLC25A21Q9BQT8 299 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 THAP7Q9BT49 309 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 IGSF5Q9NSI5 407 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 BABAM2Q9NXR7 383 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR6C2Q9NZP2 312 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF541Q9H0D2 1346 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 IGKV6D-21A0A0A0MT36 114 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LRIT2A6NDA9 550 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 OR5K3A6NET4 321 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SOCS2O14508 198 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GPR39O43194 453 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LILRB5O75023 590 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LY86O95711 162 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 FABP1P07148 127 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GAAP10253 952 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ZNF16P17020 682 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CNR2P34972 360 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SOX2P48431 317 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RPS15P62841 145 aaKnown RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 PCGF3Q3KNV8 242 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HSF5Q4G112 596 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 C6orf183Q5T699 404 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CNIH2Q6PI25 160 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 MEPCEQ7L2J0 689 aaKnown RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CCDC116Q8IYX3 515 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ADGRG5Q8IZF4 528 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LMX1AQ8TE12 382 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TMEM239Q8WW34 195 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SPRYD4Q8WW59 207 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 LHPPQ9H008 270 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 HIPK2Q9H2X6 1198 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ISYNA1Q9NPH2 558 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NLKQ9UBE8 527 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 RNF24Q9Y225 148 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 TRBV23OR9-2A0A075B6M9 112 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 DRGXA6NNA5 263 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 B4DXG7 233 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ATP6V1G2-DDX39BF2Z307 99 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 G3V2L1 256 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NME4O00746 187 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GALR3O60755 368 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 DPM1O60762 260 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 GLSO94925 669 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-203ENST00000409050 ITGB2P05107 769 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 FOSL1P15407 271 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 CR2P20023 1033 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 SLC2A5P22732 501 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 NFYBP25208 207 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 IVDP26440 423 aa5.76□□□□□ -1.49
SCN1A-203ENST00000409050 WASP42768 502 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms