RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 MESP1Q9BRJ9 268 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 DOHHQ9BU89 302 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 DPH1Q9BZG8 443 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 SLC38A1Q9H2H9 487 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 MAGIXQ9H6Y5 334 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 DCLRE1BQ9H816 532 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 MYOTQ9UBF9 498 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 SLC9A8Q9Y2E8 581 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 AP4S1Q9Y587 144 aa13.12□□□□□ -0.31
SKA1-202ENST00000398452 GPC6Q9Y625 555 aaPredicted RBP13.12□□□□□ -0.31
SKA1-202ENST00000398452 EIF4E1BA6NMX2 242 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 RRP8O43159 456 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 KLK10O43240 276 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 PRKD3O94806 890 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 IL33O95760 270 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 BAG2O95816 211 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 PABPC4LP0CB38 370 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 RAP2AP10114 183 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 FCGR1AP12314 374 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 NAGAP17050 411 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 ITGA2P17301 1181 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 ITGA3P26006 1051 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 SLC7A1P30825 629 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 IFNA8P32881 189 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 PNLIPRP2P54317 469 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 FUT5Q11128 374 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 CLN3Q13286 438 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 TCTN3Q6NUS6 607 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 OPN5Q6U736 354 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 FRRS1Q6ZNA5 592 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 LRRC69Q6ZNQ3 347 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 GALNT10Q86SR1 603 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 RPS19BP1Q86WX3 136 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 DND1Q8IYX4 353 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 PRR22Q8IZ63 422 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 PYDC1Q8WXC3 89 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 GEMIN6Q8WXD5 167 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 TAMM41Q96BW9 452 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 TMCO6Q96DC7 493 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 THOC3Q96J01 351 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 ZNF354BQ96LW1 612 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 ADOQ96SZ5 270 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 PINK1Q9BXM7 581 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 RUBCNLQ9H714 662 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 S100A14Q9HCY8 104 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 ZNF223Q9UK11 482 aaPredicted RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 POLHQ9Y253 713 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 YARS2Q9Y2Z4 477 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 FAM32AQ9Y421 112 aaKnown RBP13.11□□□□□ -0.31
SKA1-202ENST00000398452 NPFFR2Q9Y5X5 522 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 NBEAQ8NFP9 2946 aa13.11□□□□□ -0.31
SKA1-202ENST00000398452 TCRBV5S2A0A599 114 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 PRAMEF27A3QJZ7 478 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 H0Y3Z8 333 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 GNGT2O14610 69 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 TP53I11O14683 189 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 HNRNPRO43390 633 aaKnown RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 KIAA0513O60268 411 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 FCMRO60667 390 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 MFN2O95140 757 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 THBS1P07996 1170 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 PRKAR1AP10644 381 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 ENDOUP21128 410 aaKnown RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 ABCD3P28288 659 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 PRKAR1BP31321 381 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 DCTP40126 519 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 SSR4P51571 173 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 ATP12AP54707 1039 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 MEP1AQ16819 746 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 DCAF10Q5QP82 559 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 BROXQ5VW32 411 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 CYP4Z1Q86W10 505 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 TMEM156Q8N614 296 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 ZNF441Q8N8Z8 693 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 FAM110BQ8TC76 370 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 ADAMTS17Q8TE56 1095 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 CANT1Q8WVQ1 401 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 ASB15Q8WXK1 588 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 BBC3Q96PG8 261 aaPredicted RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 CCNL2Q96S94 520 aaPredicted RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 PRR14Q9BWN1 585 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 TBL1XR1Q9BZK7 514 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 SAP130Q9H0E3 1048 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 CDCP1Q9H5V8 836 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 EVA1AQ9H8M9 152 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 LIN28AQ9H9Z2 209 aaKnown RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 ZBTB20Q9HC78 741 aaPredicted RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 HHATLQ9HCP6 504 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 UBQLN4Q9NRR5 601 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 CCM2LQ9NUG4 571 aaPredicted RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 ZNF443Q9Y2A4 671 aaPredicted RBP13.1□□□□□ -0.31
SKA1-202ENST00000398452 SH3GLB1Q9Y371 365 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 ITPR1Q14643 2758 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 CCDC88CQ9P219 2028 aa13.1□□□□□ -0.31
SKA1-202ENST00000398452 LAMA5O15230 3695 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 A0A087WV48 116 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 OR6C70A6NIJ9 312 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 AGAP5A6NIR3 686 aa13.09□□□□□ -0.31
SKA1-202ENST00000398452 ARGFXA6NJG6 315 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms