RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 MBD3L2Q8NHZ7 208 aaPredicted RBP13.07□□□□□ -0.32
HMGN3-201ENST00000275036 PSMA8Q8TAA3 256 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 ZPLD1Q8TCW7 415 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 DUSP19Q8WTR2 217 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 PAIP2Q9BPZ3 127 aaKnown RBP13.07□□□□□ -0.32
HMGN3-201ENST00000275036 C3orf14Q9HBI5 128 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 ZCCHC3Q9NUD5 404 aaKnown RBP13.07□□□□□ -0.32
HMGN3-201ENST00000275036 PNPOQ9NVS9 261 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 ASIC5Q9NY37 505 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 DKKL1Q9UK85 242 aa13.07□□□□□ -0.32
HMGN3-201ENST00000275036 MRTO4Q9UKD2 239 aaKnown RBP13.07□□□□□ -0.32
HMGN3-201ENST00000275036 EIF3LQ9Y262 564 aaKnown RBP13.07□□□□□ -0.32
HMGN3-201ENST00000275036 TMEM120BA0PK00 339 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 HSPB2A8KAH6 182 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 FAM47E-STBD1D6RA91 191 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 HMGN2P05204 90 aaKnown RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 MYZAPP0CAP1 466 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 ZNF708P17019 499 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 AGFG1P52594 562 aaKnown RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 PSMD4P55036 377 aaKnown RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 DSCR4P56555 118 aaPredicted RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 CLDN8P56748 225 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 CLDN18P56856 261 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 PRR5P85299 388 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 STX3Q13277 289 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 LASP1Q14847 261 aaKnown RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 HSPB2Q16082 182 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 SMU1Q2TAY7 513 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 VPS26BQ4G0F5 336 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 CCNJQ5T5M9 372 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 OR4C3Q8NH37 302 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 OR5P2Q8WZ92 322 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 NRGNQ92686 78 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 SFXN2Q96NB2 322 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 NUF2Q9BZD4 464 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 BHLHE41Q9C0J9 482 aaPredicted RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 CALHM2Q9HA72 323 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 NOP53Q9NZM5 478 aaKnown RBP13.06□□□□□ -0.32
HMGN3-201ENST00000275036 KCNN3Q9UGI6 736 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 SNX8Q9Y5X2 465 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 ABCA4P78363 2273 aa13.06□□□□□ -0.32
HMGN3-201ENST00000275036 IGLV3-32A0A0A0MS00 114 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 H0Y3Z8 333 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 OXSR1O95747 527 aaPredicted RBP13.05□□□□□ -0.32
HMGN3-201ENST00000275036 ANGPTL1O95841 491 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 IL2RAP01589 272 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 ALOX5P09917 674 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 DDX5P17844 614 aaKnown RBP13.05□□□□□ -0.32
HMGN3-201ENST00000275036 HK1P19367 917 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CHMP24386 653 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 GCKP35557 465 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CCT3P49368 545 aaKnown RBP13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CLDN15P56746 228 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 MAGOHP61326 146 aaKnown RBP13.05□□□□□ -0.32
HMGN3-201ENST00000275036 HBA1P69905 142 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 MAD2L1Q13257 205 aaPredicted RBP13.05□□□□□ -0.32
HMGN3-201ENST00000275036 TESK1Q15569 626 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.05□□□□□ -0.32
HMGN3-201ENST00000275036 HHATQ5VTY9 493 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 OR4F3Q6IEY1 312 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 ZCCHC12Q6PEW1 402 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 ENPP6Q6UWR7 440 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CAMKMTQ7Z624 323 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CDH24Q86UP0 819 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 COX18Q8N8Q8 333 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 OR5M1Q8NGP8 315 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 MGARPQ8TDB4 240 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 JADE3Q92613 823 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CDS1Q92903 461 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 TLCD1Q96CP7 247 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 C1GALT1C1Q96EU7 318 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 KLHDC3Q9BQ90 382 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 DUSP26Q9BV47 211 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 TBL1XR1Q9BZK7 514 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 TMBIM4Q9HC24 238 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 SDHAF3Q9NRP4 125 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 ATAD3AQ9NVI7 634 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 GPATCH2Q9NW75 528 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 CLCF1Q9UBD9 225 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 ITGB1BP2Q9UKP3 347 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 KCNE3Q9Y6H6 103 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 F8P00451 2351 aa13.05□□□□□ -0.32
HMGN3-201ENST00000275036 HIVEP1P15822 2718 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 CLCA1A8K7I4 914 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ALG1L2C9J202 215 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 H0YC42 278 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 DVL2O14641 736 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 ANKRD28O15084 1053 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 GMFGO60234 142 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 SNUPNO95149 360 aaKnown RBP13.04□□□□□ -0.32
HMGN3-201ENST00000275036 CAPN3P20807 821 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 TBXA2RP21731 343 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 PRIM2P49643 509 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 TPD52P55327 224 aaPredicted RBP13.04□□□□□ -0.32
HMGN3-201ENST00000275036 POU6F2P78424 691 aaPredicted RBP13.04□□□□□ -0.32
HMGN3-201ENST00000275036 FOXF2Q12947 444 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 MYBPHQ13203 477 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 TP53BP2Q13625 1128 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 RCAN2Q14206 197 aa13.04□□□□□ -0.32
HMGN3-201ENST00000275036 SF3B4Q15427 424 aaKnown RBP eCLIP13.04□□□□□ -0.326e-7■■■■□ 26.7
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms