RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 H1FNTQ75WM6 255 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM126BQ8IUX1 230 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 UEVLDQ8IX04 471 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM185AQ8NFB2 350 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR9I1Q8NGQ6 314 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RHPN1Q8TCX5 695 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF480Q8WV37 535 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 UBE2FQ969M7 185 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF583Q96ND8 569 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SPSB2Q99619 263 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MRPS30Q9NP92 439 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ABI3Q9P2A4 366 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TCAF1Q9Y4C2 921 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SHANK1Q9Y566 2161 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 COL15A1P39059 1388 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SLC5A10A0PJK1 596 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 HS6ST1O60243 411 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 AMHP03971 560 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 AQP2P41181 271 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A8P48029 635 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SLC6A11P48066 632 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 KHKP50053 298 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 BOP1Q14137 746 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SPCS2Q15005 226 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RNPS1Q15287 305 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM41BQ5BJD5 291 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 AGAP6Q5VW22 663 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CYS1Q717R9 158 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PID1Q7Z2X4 250 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 Q8N402 240 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 IL17REQ8NFR9 667 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 AGAP4Q96P64 663 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 DPH2Q9BQC3 489 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CPEB1Q9BZB8 566 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SIK2Q9H0K1 926 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ANKRD19PQ9H560 264 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 HES4Q9HCC6 221 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PHIPQ8WWQ0 1821 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 METTL12A8MUP2 240 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 AHSGP02765 367 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TYMSP04818 313 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SPP1P10451 314 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 AGTR1P30556 359 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 HSD17B3P37058 310 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RHOBP62745 196 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LCN2P80188 198 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RAB32Q13637 225 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RTL6Q6ICC9 239 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 VITQ6UXI7 678 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GAREM2Q75VX8 874 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 STEAP2Q8NFT2 490 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR13F1Q8NGS4 319 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR8D1Q8WZ84 308 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RPL3LQ92901 407 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 C4orf36Q96KX1 117 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM43Q9BTV4 400 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 DUS2Q9NX74 493 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 KLHL13Q9P2N7 655 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ERVW-1Q9UQF0 538 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 A6NIZ1 184 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 M0R233 179 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ACOX3O15254 700 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM63AO94886 807 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LIPAP38571 399 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MAP2K6P52564 334 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TGFB2P61812 414 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LAS2Q8IYD9 372 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RNASE8Q8TDE3 154 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RB1CC1Q8TDY2 1594 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MAGEB18Q96M61 343 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ERGIC2Q96RQ1 377 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 NKX3-1Q99801 234 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 NEURL2Q9BR09 285 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 DHX35Q9H5Z1 703 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 BARHL2Q9NY43 387 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 B3GNT2Q9NY97 397 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 B3GNT3Q9Y2A9 372 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 A0A0X1KG70 313 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TRAPPC13A5PLN9 417 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RFXANKO14593 260 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 EPOP01588 193 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MBPP02686 304 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 GSK3BP49841 420 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ACTG2P63267 376 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LIPKQ5VXJ0 399 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 OR4N5Q8IXE1 308 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 C16orf71Q8IYS4 520 aaPredicted RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 RAB1CQ92928 201 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SLC35G5Q96KT7 338 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF354BQ96LW1 612 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 TGM7Q96PF1 710 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 KCNK16Q96T55 309 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 PLEKHA2Q9HB19 425 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SLCO1C1Q9NYB5 712 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 THYN1Q9P016 225 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 CTTNBP2Q8WZ74 1663 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 NCAPD3P42695 1498 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 SETD5Q9C0A6 1442 aa3.37□□□□□ -1.87
SCN1A-221ENST00000641996 LRPPRCP42704 1394 aaKnown RBP3.37□□□□□ -1.87
SCN1A-221ENST00000641996 MEIOCA2RUB1 952 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms