RNA–Protein interactions for RNA: ENST00000612467.1

PCDHGA3-202, Transcript of protocadherin gamma subfamily A, 3, humanhuman

TSL 2

Gene PCDHGA3, Length 2,712 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3-202ENST00000612467 SOX6P35712 828 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 SMSP52788 366 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 TPTEP56180 551 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 RAB15P59190 212 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 ARF3P61204 181 aaPredicted RBP13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 ZNF791Q3KP31 576 aaPredicted RBP13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 SLC35F1Q5T1Q4 408 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 ATAD3BQ5T9A4 648 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 AGAP7PQ5VUJ5 663 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 SMARCD3Q6STE5 483 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 SLC22A18ASQ8N1D0 253 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 PFN4Q8NHR9 129 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 FAM131CQ96AQ9 280 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 SLC41A3Q96GZ6 507 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 CEP19Q96LK0 163 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 C20orf141Q9NUB4 165 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 DAPP1Q9UN19 280 aa13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 ZNF443Q9Y2A4 671 aaPredicted RBP13.14□□□□□ -0.31
PCDHGA3-202ENST00000612467 TCRBV21S2A2A0A5A6 115 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 A6NCN8 305 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 LOC110117498-PIK3R3F6TDL0 507 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 CASC3O15234 703 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 KDM1AO60341 852 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 SSTR4P31391 388 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 SRP54P61011 504 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 RPS15AP62244 130 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TRAM2Q15035 370 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 CEBPEQ15744 281 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 MEDAGQ5VYS4 303 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 Q6ZSR6 202 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 CCDC190Q86UF4 302 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TRIM48Q8IWZ4 208 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 OR8H2Q8N162 312 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 SRFBP1Q8NEF9 429 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 PROKR2Q8NFJ6 384 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 OR4K14Q8NGD5 310 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TMEM163Q8TC26 289 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 ASB15Q8WXK1 588 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 ART5Q96L15 291 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 SAMD8Q96LT4 415 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 NELL2Q99435 816 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TXNL4BQ9NX01 149 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 NDUFB11Q9NX14 153 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 CLDND1Q9NY35 253 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 CFL2Q9Y281 166 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 PRKNO60260 465 aaPredicted RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 MSL3P1P0C860 447 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 HTR2AP28223 471 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 COX10Q12887 443 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TAB1Q15750 504 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 SPANXN2Q5MJ10 180 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 MRPL38Q96DV4 380 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 C1GALT1C1Q96EU7 318 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TBX5Q99593 518 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 DPH1Q9BZG8 443 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 TIGARQ9NQ88 270 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 STUB1Q9UNE7 303 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 DIMT1Q9UNQ2 313 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 RBMX2Q9Y388 322 aaKnown RBP13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 PEX16Q9Y5Y5 336 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 CFAP54Q96N23 3096 aa13.13□□□□□ -0.31
PCDHGA3-202ENST00000612467 GXYLT2A0PJZ3 443 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 SLC35F4A4IF30 521 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 SGK494L7N484 410 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 TAF4O00268 1085 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 AP3D1O14617 1153 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 CDC123O75794 336 aaPredicted RBP13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 NCR1O76036 304 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 MED26O95402 600 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 LIMS3P0CW19 117 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 LIMS4P0CW20 117 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 NT5EP21589 574 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 SDC2P34741 201 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 MTNR1AP48039 350 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 PRKCDQ05655 676 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 HNRNPA0Q13151 305 aaKnown RBP13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 BAK1Q16611 211 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 CDC73Q6P1J9 531 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 CD300LDQ6UXZ3 194 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 UBE2J2Q8N2K1 259 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 ZNF614Q8N883 585 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 GNPDA2Q8TDQ7 276 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 MS4A4EQ96PG1 132 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 NEDD4LQ96PU5 975 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 SDF2Q99470 211 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 C2orf42Q9NWW7 574 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 LYARQ9NX58 379 aaKnown RBP13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 LIPT1Q9Y234 373 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 HEBP2Q9Y5Z4 205 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 CPMP14384 443 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 ANXA11P50995 505 aaKnown RBP13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 VSX2P58304 361 aaPredicted RBP13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 ST3GAL3Q11203 375 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 TSPAN31Q12999 210 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 TIMM50Q3ZCQ8 353 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 CCBE1Q6UXH8 406 aaPredicted RBP13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 CAMKK1Q8N5S9 505 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 PIGXQ8TBF5 258 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 TM4SF19Q96DZ7 209 aa13.12□□□□□ -0.31
PCDHGA3-202ENST00000612467 MCOLN1Q9GZU1 580 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms