RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 MID2Q9UJV3 735 aa9.43□□□□□ -0.9
VPS4B-207ENST00000591519 MAPRE3Q9UPY8 281 aa9.43□□□□□ -0.9
VPS4B-207ENST00000591519 STK38LQ9Y2H1 464 aa9.43□□□□□ -0.9
VPS4B-207ENST00000591519 RPH3AQ9Y2J0 694 aaPredicted RBP9.43□□□□□ -0.9
VPS4B-207ENST00000591519 WIF1Q9Y5W5 379 aa9.43□□□□□ -0.9
VPS4B-207ENST00000591519 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CCDC151A5D8V7 595 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CLCA1A8K7I4 914 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 EEF1E1-BLOC1S5C9J1V9 151 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CTIFO43310 598 aaKnown RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 EEF1E1O43324 174 aaKnown RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 HCRTR2O43614 444 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 PCDH7O60245 1069 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ERN1O75460 977 aaKnown RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 TNFSF13O75888 250 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ATE1O95260 518 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ESRRBO95718 433 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 HRGP04196 525 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ENO1P06733 434 aaKnown RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CRHP06850 196 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 IL3P08700 152 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ZNF708P17019 499 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 HOXB4P17483 251 aaPredicted RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 HOXC12P31275 282 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 MPIP34949 423 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 STARP49675 285 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 FOXA1P55317 472 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 PKNOX1P55347 436 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CLDN18P56856 261 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CORO7P57737 925 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 DNAJB13P59910 316 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 FOXD4Q12950 439 aaPredicted RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 DEFB113Q30KQ7 82 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 SPIN4Q56A73 249 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 CLEC6AQ6EIG7 209 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 FRMD7Q6ZUT3 714 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 EXOC3L1Q86VI1 746 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ANKRD42Q8N9B4 389 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 C16orf78Q8WTQ4 265 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 SMPDL3BQ92485 455 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 KAT2AQ92830 837 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 APIPQ96GX9 242 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 GATA5Q9BWX5 397 aaPredicted RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 RBM24Q9BX46 236 aaKnown RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 ANKRA2Q9H9E1 313 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 TNFRSF12AQ9NP84 129 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 TAS2R9Q9NYW1 312 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 FBXL2Q9UKC9 423 aa9.42□□□□□ -0.9
VPS4B-207ENST00000591519 WBP11Q9Y2W2 641 aaKnown RBP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 NIPBLQ6KC79 2804 aaeCLIP9.42□□□□□ -0.9
VPS4B-207ENST00000591519 A0A087WV62 115 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 MYO1GB0I1T2 1018 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 B4DXG7 233 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 H0Y3Z8 333 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 PLOD2O00469 737 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 TRIM13O60858 407 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 SLITRK5O94991 958 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 MYZAPP0CAP1 466 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 GRK2P25098 689 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 TIA1P31483 386 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 DSCR4P56555 118 aaPredicted RBP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 B3GALT5-AS1P59052 145 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 MRPS22P82650 360 aaKnown RBP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 PSG6Q00889 435 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 SRYQ05066 204 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 ACSM2AQ08AH3 577 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 KEAP1Q14145 624 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 CYP27C1Q4G0S4 372 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 ACSM2BQ68CK6 577 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 LRIG3Q6UXM1 1119 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 NPSR1Q6W5P4 371 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 LARP4Q71RC2 724 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 FADS6Q8N9I5 356 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 OR7G2Q8NG99 324 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 OR9A2Q8NGT5 310 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 CDC26Q8NHZ8 85 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 PPP1R14CQ8TAE6 165 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 AGR3Q8TD06 166 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 EDARADDQ8WWZ3 215 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 EXOSC8Q96B26 276 aaKnown RBP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 INTS12Q96CB8 462 aaKnown RBP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 PAIP2Q9BPZ3 127 aaKnown RBP9.41□□□□□ -0.9
VPS4B-207ENST00000591519 FOLH1BQ9HBA9 442 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 GIMAP4Q9NUV9 329 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 GALNT8Q9NY28 637 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 NAV3Q8IVL0 2385 aa9.41□□□□□ -0.9
VPS4B-207ENST00000591519 PCNX3Q9H6A9 2034 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 GNG14A0A1W2PPG7 69 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 A0A1W2PPR1 153 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 SH3D21A4FU49 640 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 H3BQF6 201 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 LINC01387J3KSC0 135 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 TYROBPO43914 113 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 FADS1O60427 444 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 NME6O75414 186 aaPredicted RBP9.4□□□□□ -0.9
VPS4B-207ENST00000591519 TNFRSF21O75509 655 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 PSMG1O95456 288 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 TGM6O95932 706 aa9.4□□□□□ -0.9
VPS4B-207ENST00000591519 CHRNGP07510 517 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms