RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 MTHFD2P13995 350 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 POLR2IP36954 125 aaKnown RBP16.55■□□□□ 0.24
PHRF1-205ENST00000533464 CCNJQ5T5M9 372 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 PELI3Q8N2H9 469 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 TMEM102Q8N9M5 508 aaPredicted RBP16.55■□□□□ 0.24
PHRF1-205ENST00000533464 CCDC54Q8NEL0 328 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 CREB3L1Q96BA8 519 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 TUBB1Q9H4B7 451 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 PRSS16Q9NQE7 514 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 SCN9AQ15858 1988 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 BOLA2-SMG1P6H3BVE0 249 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 LAMTOR5O43504 91 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 TSPAN9O75954 239 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 F3P13726 295 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 FRKP42685 505 aaPredicted RBP16.55■□□□□ 0.24
PHRF1-205ENST00000533464 RIDAP52758 137 aaKnown RBP16.55■□□□□ 0.24
PHRF1-205ENST00000533464 RPE65Q16518 533 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 LRRC26Q2I0M4 334 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 KCTD9Q7L273 389 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 MCATQ8IVS2 390 aaKnown RBP16.55■□□□□ 0.24
PHRF1-205ENST00000533464 DIO2Q92813 273 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 CEPT1Q9Y6K0 416 aa16.55■□□□□ 0.24
PHRF1-205ENST00000533464 FAM171A2A8MVW0 826 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 C17orf105B2RV13 164 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ITGAMP11215 1152 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 FXYD6P3P58550 94 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ZER1Q7Z7L7 766 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ACOT12Q8WYK0 555 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 STRADBQ9C0K7 418 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 CXXC1Q9P0U4 656 aaPredicted RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 SCN7AQ01118 1682 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 RAB3BP20337 219 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ZNF691Q5VV52 312 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 RAET1LQ5VY80 246 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 PODNL1Q6PEZ8 512 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 AKAP1Q92667 903 aaKnown RBP eCLIP16.54■□□□□ 0.246e-21■□□□□ 9.5
PHRF1-205ENST00000533464 ZMYND19Q96E35 227 aaPredicted RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ACSS1Q9NUB1 689 aaPredicted RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 FBXO9Q9UK97 447 aaPredicted RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 J3KTA2 159 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 TAPBPO15533 448 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 CACNG3O60359 315 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 IGLV3-25P01717 112 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ARAFP10398 606 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 MAGEA8P43361 318 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 KCNJ5P48544 419 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 SMN1Q16637 294 aaKnown RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 SLC22A8Q8TCC7 542 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ADAMTS16Q8TE57 1224 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 TREX2Q9BQ50 279 aaPredicted RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 EVPLQ92817 2033 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 MTRF1O75570 445 aaKnown RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 MAS1P04201 325 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 GALK2Q01415 458 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 EXOSC7Q15024 291 aaKnown RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 OCLNQ16625 522 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 LRRN1Q6UXK5 716 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ACOT11Q8WXI4 607 aaPredicted RBP16.54■□□□□ 0.24
PHRF1-205ENST00000533464 CCDC120Q96HB5 630 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ALG8Q9BVK2 526 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 SAP130Q9H0E3 1048 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 ERVK-19Q9WJR5 959 aa16.54■□□□□ 0.24
PHRF1-205ENST00000533464 TFAP2AP05549 437 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 S100A6P06703 90 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 LCN1P31025 176 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 CXCR4P61073 352 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 NFATC4Q14934 902 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 SPIN3Q5JUX0 258 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 DCST2Q5T1A1 773 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 PIP5KL1Q5T9C9 394 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 ULK3Q6PHR2 472 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 GDPGP1Q6ZNW5 385 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 SPPL3Q8TCT6 385 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 MNTQ99583 582 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 FUT1P19526 365 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 XCR1P46094 333 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 TEX37Q96LM6 180 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 OR7D2Q96RA2 312 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 ZSCAN5BA6NJL1 495 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 KIAA0355O15063 1070 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 CDK1P06493 297 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 MAOBP27338 520 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 LRIF1Q5T3J3 769 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 B3GNT8Q7Z7M8 397 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 PRR22Q8IZ63 422 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 OR4K3Q96R72 315 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 CCDC32Q9BV29 185 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 ZNF717Q9BY31 904 aaPredicted RBP16.53■□□□□ 0.24
PHRF1-205ENST00000533464 IRF2BPLQ9H1B7 796 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 PADI2Q9Y2J8 665 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 PHIPQ8WWQ0 1821 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 LHCGRP22888 699 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 AHRP35869 848 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 Q6ZPB1 254 aaPredicted RBP16.53■□□□□ 0.24
PHRF1-205ENST00000533464 VRK2Q86Y07 508 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 LRRTM2O43300 516 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 ZNF84P51523 738 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 S100A10P60903 97 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 TBC1D25Q3MII6 688 aa16.53■□□□□ 0.24
PHRF1-205ENST00000533464 XKRXQ6PP77 449 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms