RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 CPA3P15088 417 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 HPGDP15428 266 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CHN1P15882 459 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PPP3CBP16298 524 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 HK1P19367 917 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FPR1P21462 350 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PRPH2P23942 346 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 GCAP28676 217 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CRHR1P34998 444 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 GPC1P35052 558 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 SOX18P35713 384 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 RPL3P39023 403 aaKnown RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 MC3RP41968 323 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 ASMTP46597 345 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 SLCO1A2P46721 670 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 SERPINB4P48594 390 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 AGFG1P52594 562 aaKnown RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 GAS1P54826 345 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 WNT3P56703 355 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CLDN18P56856 261 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PSG6Q00889 435 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 DUSP2Q05923 314 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FOXF2Q12947 444 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 SGCBQ16585 318 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 TCHHL1Q5QJ38 904 aaPredicted RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 SH2D4BQ5SQS7 431 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 DCST1Q5T197 706 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PDSS1Q5T2R2 415 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 RAET1LQ5VY80 246 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 OR5M10Q6IEU7 315 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FAM71E1Q6IPT2 247 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FAM180BQ6P0A1 224 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 LRIG3Q6UXM1 1119 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 RNF165Q6ZSG1 346 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FRMD7Q6ZUT3 714 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 R3HCC1LQ7Z5L2 792 aaKnown RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 LUZP2Q86TE4 346 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 BIVMQ86UB2 503 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 TDRPQ86YL5 185 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 MISPQ8IVT2 679 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 MMP21Q8N119 569 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FADS6Q8N9I5 356 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CDRT4Q8N9R6 151 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CCDC63Q8NA47 563 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 SIMC1Q8NDZ2 872 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 OR2M3Q8NG83 312 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 OR7G2Q8NG99 324 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CDC26Q8NHZ8 85 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 LINC01560Q8TB33 94 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS41-208ENST00000448833 DUSP19Q8WTR2 217 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 NRGNQ92686 78 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 CAVIN3Q969G5 261 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 EFHD2Q96C19 240 aaPredicted RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 MTERF3Q96E29 417 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 ZBED6CLQ96FA7 236 aaPredicted RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 PGM2Q96G03 612 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 AMDHD1Q96NU7 426 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PIP5K1AQ99755 562 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 G6PC3Q9BUM1 346 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PRRG4Q9BZD6 226 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 DSN1Q9H410 356 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 GSTO2Q9H4Y5 243 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PLEKHF2Q9H8W4 249 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 EML4Q9HC35 981 aaKnown RBP6.4□□□□□ -1.38
VPS41-208ENST00000448833 GLRX2Q9NS18 164 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 OXSMQ9NWU1 459 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 C1orf109Q9NX04 203 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 TBK1Q9UHD2 729 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 FBXL2Q9UKC9 423 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 PLEKHA6Q9Y2H5 1048 aa6.4□□□□□ -1.38
VPS41-208ENST00000448833 DSCAMO60469 2012 aa6.4□□□□□ -1.39
VPS41-208ENST00000448833 IGLV3-32A0A0A0MS00 114 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 A0A1W2PNV4 684 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 KDM4EB2RXH2 506 aaPredicted RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 TMEM114B3SHH9 223 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 G3V2L1 256 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 C16orf97H3BN30 126 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 UPK1AO00322 258 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 COPEO14579 308 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 NDUFB5O43674 189 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 SCO2O43819 266 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 TBX19O60806 448 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 TNFSF13O75888 250 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ATE1O95260 518 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 PSMG1O95456 288 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 NGFRP08138 427 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 PABPC4LP0CB38 370 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 CD8BP10966 210 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ZNF17P17021 662 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 ME2P23368 584 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 MAPK1P28482 360 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 GABRA3P34903 492 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 CD79BP40259 229 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 EIF1P41567 113 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 KCNJ5P48544 419 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 STARP49675 285 aa6.39□□□□□ -1.39
VPS41-208ENST00000448833 MANFP55145 182 aaKnown RBP6.39□□□□□ -1.39
VPS41-208ENST00000448833 ADAM8P78325 824 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms