RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 HNRNPCL2B2RXH8 293 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 HNRNPCL3B7ZW38 293 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 FCMRO60667 390 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 UGT2B11O75310 529 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 UTS2O95399 124 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 H6PDO95479 791 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 F10P00742 488 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 HNRNPCL4P0DMR1 293 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 CYP4B1P13584 511 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 GSK3BP49841 420 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 KCNAB2Q13303 367 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 SCARB2Q14108 478 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 AP1ARQ63HQ0 302 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 SLC22A10Q63ZE4 541 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 IGFL3Q6UXB1 125 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 GALNT10Q86SR1 603 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 MICU2Q8IYU8 434 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 GOLM1Q8NBJ4 401 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 OR5M3Q8NGP4 307 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 HGDQ93099 445 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 MAL2Q969L2 176 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 TMCO6Q96DC7 493 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 SECISBP2Q96T21 854 aaKnown RBP14.51□□□□□ -0.09
USP40-206ENST00000443711 HOXD1Q9GZZ0 328 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 SAP130Q9H0E3 1048 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 ALG2Q9H553 416 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 MTHFD2LQ9H903 347 aaPredicted RBP14.51□□□□□ -0.09
USP40-206ENST00000443711 PRPF19Q9UMS4 504 aaKnown RBP14.51□□□□□ -0.09
USP40-206ENST00000443711 ANGPT4Q9Y264 503 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 EML6Q6ZMW3 1958 aa14.51□□□□□ -0.09
USP40-206ENST00000443711 ELOVL7A1L3X0 281 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 CHRM4P08173 479 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 PCGF2P35227 344 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 ATP12AP54707 1039 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 CHRNEQ04844 493 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 VEZF1Q14119 521 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 OR1C1Q15619 314 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 GPR68Q15743 365 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 MAPK11Q15759 364 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 FLYWCH1Q4VC44 716 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 LACTB2Q53H82 288 aaPredicted RBP14.5□□□□□ -0.09
USP40-206ENST00000443711 INTS11Q5TA45 600 aaKnown RBP14.5□□□□□ -0.09
USP40-206ENST00000443711 FRRS1Q6ZNA5 592 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 ZAR1Q86SH2 424 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 ZNF619Q8N2I2 560 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 HIPK4Q8NE63 616 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 TNIP2Q8NFZ5 429 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 OR10G3Q8NGC4 313 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 BBS10Q8TAM1 723 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 SPPL2AQ8TCT8 520 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 PAQR8Q8TEZ7 354 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 KCTD14Q9BQ13 255 aaPredicted RBP14.5□□□□□ -0.09
USP40-206ENST00000443711 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.5□□□□□ -0.09
USP40-206ENST00000443711 SLC38A1Q9H2H9 487 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 BCL2L10Q9HD36 194 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 TIMMDC1Q9NPL8 285 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 UBQLN4Q9NRR5 601 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 CNIH4Q9P003 139 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 CD300AQ9UGN4 299 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 MKLN1Q9UL63 735 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 PCDHGA10Q9Y5H3 936 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.5□□□□□ -0.09
USP40-206ENST00000443711 ZFHX4Q86UP3 3567 aa14.5□□□□□ -0.09
USP40-206ENST00000443711 CELSR3Q9NYQ7 3312 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 GSTA4O15217 222 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 KIAA0513O60268 411 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 ICOSLGO75144 302 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 NEURL1O76050 574 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 PGM3O95394 542 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 NGFRP08138 427 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 FAM87AP0C7U9 286 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 HSD17B1P14061 328 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 HPGDP15428 266 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 HTR1EP28566 365 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 CLK3P49761 638 aaKnown RBP14.49□□□□□ -0.09
USP40-206ENST00000443711 NCALDP61601 193 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 GRAMD1BQ3KR37 738 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 DESI1Q6ICB0 168 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 SPINK14Q6IE38 97 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 TYW3Q6IPR3 259 aaKnown RBP14.49□□□□□ -0.09
USP40-206ENST00000443711 OLIG3Q7RTU3 272 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 ZNF227Q86WZ6 799 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 KRT73Q86Y46 540 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 RNF148Q8N7C7 305 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 ZNF527Q8NB42 609 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 MDS2Q8NDY4 140 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 OR4C3Q8NH37 302 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 C9orf43Q8TAL5 461 aaPredicted RBP14.49□□□□□ -0.09
USP40-206ENST00000443711 OIT3Q8WWZ8 545 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 C5orf34Q96MH7 638 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 SIGLEC12Q96PQ1 595 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 NODALQ96S42 347 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 TREX2Q9BQ50 279 aaPredicted RBP14.49□□□□□ -0.09
USP40-206ENST00000443711 THTPAQ9BU02 230 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 RUBCNLQ9H714 662 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 SACM1LQ9NTJ5 587 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 ABCG2Q9UNQ0 655 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 USP22Q9UPT9 525 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 TP53TG5Q9Y2B4 290 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 CHCHD2Q9Y6H1 151 aaPredicted RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms