RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 HOXD1Q9GZZ0 328 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ZCCHC3Q9NUD5 404 aaKnown RBP8.2□□□□□ -1.1
SYNE1-206ENST00000367253 SPHK1Q9NYA1 384 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 TAS2R9Q9NYW1 312 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 FBLL1A6NHQ2 334 aaKnown RBP8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ARPC2O15144 300 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 IFNA1P01562 189 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 CPN1P15169 458 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ITPKAP23677 461 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 HOXA9P31269 272 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 CSNK1EP49674 416 aaKnown RBP8.2□□□□□ -1.1
SYNE1-206ENST00000367253 MAXP61244 160 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 GNB2P62879 340 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 PLA2G7Q13093 441 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 FADDQ13158 208 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 KEAP1Q14145 624 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 SLC46A3Q7Z3Q1 461 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ASPGQ86U10 573 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ZDHHC21Q8IVQ6 265 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF440Q8IYI8 595 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 KLHL36Q8N4N3 616 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 PSMG2Q969U7 264 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 ELSPBP1Q96BH3 223 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 C7orf34Q96L11 122 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 PKIBQ9C010 78 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 LTB4R2Q9NPC1 389 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 C11orf16Q9NQ32 467 aa8.2□□□□□ -1.1
SYNE1-206ENST00000367253 CNOT6Q9ULM6 557 aaKnown RBP8.2□□□□□ -1.1
SYNE1-206ENST00000367253 A0A1B0GVT2 93 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TLR4O00206 839 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TNFSF14O43557 240 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 DENRO43583 198 aaKnown RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TOXO94900 526 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 CLDN9O95484 217 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 KCNE1P15382 129 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MEOX2P50222 304 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MPP1Q00013 466 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 PPP3CAQ08209 521 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 UGT8Q16880 541 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 PSAPL1Q6NUJ1 521 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 NCEH1Q6PIU2 408 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TSPAN33Q86UF1 283 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MINDY1Q8N5J2 469 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TSSK3Q96PN8 268 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 PTPN18Q99952 460 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 BCL7BQ9BQE9 202 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 GPR61Q9BZJ8 451 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TINAGL1Q9GZM7 467 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 OPN3Q9H1Y3 402 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MMP27Q9H306 513 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TAS2R10Q9NYW0 307 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MUTYHQ9UIF7 546 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 SCP2D1Q9UJQ7 156 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 LRRC42Q9Y546 428 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 A0A1W2PPL8 197 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 KRBA1A5PL33 1030 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 GGT3PA6NGU5 568 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 NKX6-3A6NJ46 265 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MATN3O15232 486 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ARL6IP5O75915 188 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 NAA10P41227 235 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 KCNC4Q03721 635 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MSS51Q4VC12 460 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF709Q8N972 641 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ZBTB44Q8NCP5 570 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 SLC2A12Q8TD20 617 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MEGF10Q96KG7 1140 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 NECAB3Q96P71 396 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ARL6Q9H0F7 186 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MYO9BQ13459 2157 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 LRIT2A6NDA9 550 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 K7ERQ8 282 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 XPNPEP2O43895 674 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 TBX10O75333 385 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 SCRG1O75711 98 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MT-CO3P00414 261 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 CSF2P04141 144 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 FMO3P31513 532 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 RPL24P83731 157 aaKnown RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 CDK10Q15131 360 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 PPM1JQ5JR12 505 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 FSTL4Q6MZW2 842 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 CCBE1Q6UXH8 406 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 PLEKHG7Q6ZR37 379 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF550Q7Z398 422 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 FBXL14Q8N1E6 418 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 APOBEC4Q8WW27 367 aaKnown RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 STON2Q8WXE9 905 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ZUFSPQ96AP4 578 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 GIMAP5Q96F15 307 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 PCDHB18PQ96TA0 734 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 MINDY3Q9H8M7 445 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ENAMQ9NRM1 1142 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 AQP12BA6NM10 295 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 ZNF207O43670 478 aaKnown RBP8.19□□□□□ -1.1
SYNE1-206ENST00000367253 HLA-DPB1P04440 258 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 CLEC2LP0C7M8 214 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 DUSP6Q16828 381 aa8.19□□□□□ -1.1
SYNE1-206ENST00000367253 EML3Q32P44 896 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms