RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 OSTF1Q92882 214 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 MCOLN1Q9GZU1 580 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 LYRM4Q9HD34 91 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 EVA1BQ9NVM1 165 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 IL20Q9NYY1 176 aa19.43■□□□□ 0.7
CCDC88B-203ENST00000359902 SNX4O95219 450 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 EIF2S1P05198 315 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF10P21506 573 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 AKT2P31751 481 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 TNFSF8P32971 234 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 GPR4P46093 362 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 WNT4P56705 351 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 EEF1A1P68104 462 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 BNC1Q01954 994 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 DUSP8Q13202 625 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 LARS2Q15031 903 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 OR2G6Q5TZ20 316 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 RPLP0P6Q8NHW5 317 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 HTRA1Q92743 480 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 ITPKCQ96DU7 683 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 SMURF1Q9HCE7 757 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 SNTG1Q9NSN8 517 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 PAIP2BQ9ULR5 123 aaKnown RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 DNAH14Q0VDD8 3507 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 TMEM129A0AVI4 362 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 IRGMA1A4Y4 181 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 PIP5K1CO60331 668 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 RORCP51449 518 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF136P52737 540 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 ILF3Q12906 894 aaKnown RBP eCLIP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 CBX3Q13185 183 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 RAB30Q15771 203 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 SLC30A6Q6NXT4 461 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 ZFPM2Q8WW38 1151 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 SDHCQ99643 169 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 PIGUQ9H490 435 aa19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 SPIN1Q9Y657 262 aaPredicted RBP19.42■□□□□ 0.7
CCDC88B-203ENST00000359902 LDB3O75112 727 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 CH25HO95992 272 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 GPR68Q15743 365 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 EXOSC6Q5RKV6 272 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 SFTPA2Q8IWL1 248 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 POGLUT1Q8NBL1 392 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 TMEM52Q8NDY8 209 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 BAHD1Q8TBE0 780 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 TM9SF4Q92544 642 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 RERGQ96A58 199 aaPredicted RBP19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 SLC30A2Q9BRI3 323 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 PRRG3Q9BZD7 231 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 TXNL4BQ9NX01 149 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 CPNE7Q9UBL6 633 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 SLC7A7Q9UM01 511 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 SCN2AQ99250 2005 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 LOC110117498-PIK3R3F6TDL0 507 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 PLD2O14939 933 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 SURF4O15260 269 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 MAPK14Q16539 360 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 TOR1AIP2Q8NFQ8 470 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 GATAD2BQ8WXI9 593 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 PIK3R3Q92569 461 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 CEP19Q96LK0 163 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 NELL2Q99435 816 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF350Q9GZX5 532 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 MIR1-1HGQ9H1L0 117 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 CACYBPQ9HB71 228 aaKnown RBP19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 IL21RQ9HBE5 538 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 ADAP2Q9NPF8 381 aa19.41■□□□□ 0.7
CCDC88B-203ENST00000359902 TCRBV21S2A2A0A5A6 115 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 C2orf74A8MZ97 194 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 FGF17O60258 216 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 THBS1P07996 1170 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 GABRG2P18507 467 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 AADACL4Q5VUY2 407 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 SHFQ7M4L6 423 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 LAPTM4BQ86VI4 370 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 OR13H1Q8NG92 308 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 GPBAR1Q8TDU6 330 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 TMEM203Q969S6 136 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 TCEAL2Q9H3H9 227 aaPredicted RBP19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 NLGN3Q9NZ94 848 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 ENTPD2Q9Y5L3 495 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 HS3ST3A1Q9Y663 406 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 STK25O00506 426 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 CYR61O00622 381 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 PTTG1O95997 202 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 ATP1B1P05026 303 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 TSPAN19P0C672 248 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 LIMS3P0CW19 117 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 LIMS4P0CW20 117 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 SPNP16150 400 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 ZNF620Q6ZNG0 422 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 GALNT12Q8IXK2 581 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 SLC22A18ASQ8N1D0 253 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 FLCNQ8NFG4 579 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 OR5T3Q8NGG3 340 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 RSC1A1Q92681 617 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 FBXO34Q9NWN3 711 aa19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 EXOSC1Q9Y3B2 195 aaKnown RBP19.4■□□□□ 0.7
CCDC88B-203ENST00000359902 CDC42EP2O14613 210 aa19.39■□□□□ 0.69
CCDC88B-203ENST00000359902 CEP290O15078 2479 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms