RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 PATL1Q86TB9 770 aaKnown RBP23.2■■□□□ 1.3
SHMT1-207ENST00000580002 BBS10Q8TAM1 723 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 EFHD2Q96C19 240 aaPredicted RBP23.2■■□□□ 1.3
SHMT1-207ENST00000580002 VMP1Q96GC9 406 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 Q9N2J8 555 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 FLRT3Q9NZU0 649 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 WASF3Q9UPY6 502 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 CHST2Q9Y4C5 530 aa23.2■■□□□ 1.3
SHMT1-207ENST00000580002 ZFHX4Q86UP3 3567 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 SYNDIG1LA6NDD5 238 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 FKBP6O75344 327 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 CD82P27701 267 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 OR1E2P47887 323 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 SELENOWP63302 87 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 TBCELQ5QJ74 424 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 ATP1A1-AS1Q5TC04 95 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 AAGABQ6PD74 315 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 LSRQ86X29 649 aaPredicted RBP23.19■■□□□ 1.3
SHMT1-207ENST00000580002 SLC30A8Q8IWU4 369 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 METTL25Q8N6Q8 603 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 TMBIM1Q969X1 311 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 SLC47A1Q96FL8 570 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 SCNM1Q9BWG6 230 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 RNPEPL1Q9HAU8 725 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 LIFP15018 202 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 ANPEPP15144 967 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 DRD5P21918 477 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 KCNJ10P78508 379 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 MTX3Q5HYI7 312 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 NDUFAF7Q7L592 441 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 ARMC8Q8IUR7 673 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 ELP5Q8TE02 316 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 LRTOMTQ8WZ04 291 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 PKP2Q99959 881 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 CHID1Q9BWS9 393 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 THSD1Q9NS62 852 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 P4HTMQ9NXG6 502 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 FBXL4Q9UKA2 621 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 CFL2Q9Y281 166 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 PCDHGB3Q9Y5G1 929 aa23.19■■□□□ 1.3
SHMT1-207ENST00000580002 FRG2CA6NGY1 282 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 OR6C76A6NM76 312 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 WWP2O00308 870 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 SUV39H1O43463 412 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 MAN1A2O60476 641 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 STX11O75558 287 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 IGHEP01854 428 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 PSMA4P25789 261 aaKnown RBP23.18■■□□□ 1.3
SHMT1-207ENST00000580002 HLA-DQA1Q5Y7H0 255 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 HMBOX1Q6NT76 420 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 FKBP9P1Q75LS8 142 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 TSEN54Q7Z6J9 526 aaKnown RBP23.18■■□□□ 1.3
SHMT1-207ENST00000580002 EID3Q8N140 333 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 OR4D11Q8NGI4 311 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 NAF1Q96HR8 494 aaKnown RBP23.18■■□□□ 1.3
SHMT1-207ENST00000580002 SAP130Q9H0E3 1048 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 DCLRE1BQ9H816 532 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 GPN2Q9H9Y4 310 aaPredicted RBP23.18■■□□□ 1.3
SHMT1-207ENST00000580002 RPS6KA6Q9UK32 745 aa23.18■■□□□ 1.3
SHMT1-207ENST00000580002 SAMD4AQ9UPU9 718 aaKnown RBP23.18■■□□□ 1.3
SHMT1-207ENST00000580002 NSG1A0A0A6YYJ2 146 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 SEMG1P04279 462 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 GPIP06744 558 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 UMPSP11172 480 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 WT1P19544 449 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-207ENST00000580002 SDHBP21912 280 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ATP1A4Q13733 1029 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 PUM1Q14671 1186 aaKnown RBP eCLIP23.17■■□□□ 1.3
SHMT1-207ENST00000580002 FCRLBQ6BAA4 426 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 AMIGO2Q86SJ2 522 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 MRGPREQ86SM8 312 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ADAMTS17Q8TE56 1095 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ZNF607Q96SK3 696 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 DOHHQ9BU89 302 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 RLIMQ9NVW2 624 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ADPRHL2Q9NX46 363 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 SEC14L3Q9UDX4 400 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 PCDHGA6Q9Y5G7 932 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 BCAS1O75363 584 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-207ENST00000580002 DIRAS1O95057 198 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 LIPCP11150 499 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ETS2P15036 469 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 KCNJ5P48544 419 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 SESN3P58005 492 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 AP2B1P63010 937 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 HPCAP84074 193 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 VLDLRP98155 873 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 GNA13Q14344 377 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 TCTN3Q6NUS6 607 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 RBM45Q8IUH3 476 aaKnown RBP23.17■■□□□ 1.3
SHMT1-207ENST00000580002 LACC1Q8IV20 430 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ZNF619Q8N2I2 560 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 CLIP4Q8N3C7 705 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 PAPD5Q8NDF8 572 aaKnown RBP23.17■■□□□ 1.3
SHMT1-207ENST00000580002 ARSGQ96EG1 525 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 MTHFD2LQ9H903 347 aaPredicted RBP23.17■■□□□ 1.3
SHMT1-207ENST00000580002 SH3GLB1Q9Y371 365 aa23.17■■□□□ 1.3
SHMT1-207ENST00000580002 A0A1W2PQ72 361 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 hCG_2039718K7EN88 272 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 UGT2B17O75795 530 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms