RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 PMS2P3Q13401 168 aa13.24□□□□□ -0.29
TCOF1-207ENST00000504761 GBX1Q14549 363 aa13.24□□□□□ -0.29
TCOF1-207ENST00000504761 GALNT15Q8N3T1 639 aa13.24□□□□□ -0.29
TCOF1-207ENST00000504761 CRELD1Q96HD1 420 aa13.24□□□□□ -0.29
TCOF1-207ENST00000504761 MND1Q9BWT6 205 aa13.24□□□□□ -0.29
TCOF1-207ENST00000504761 TMEM185BQ9H7F4 350 aa13.24□□□□□ -0.29
TCOF1-207ENST00000504761 A0A1W2PPK0 400 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 A0A1W2PR48 441 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 NPIPA5E9PKD4 350 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 YY2O15391 372 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PROM1O43490 865 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CLPXO76031 633 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CDRT1O95170 752 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 GPX2P18283 190 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CD22P20273 847 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 TIAL1Q01085 375 aaKnown RBP eCLIP13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PPP1R14AQ96A00 147 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 ARSGQ96EG1 525 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 MGLLQ99685 303 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 EBF1Q9UH73 591 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 NPIPA1Q9UND3 350 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CSNK1G3Q9Y6M4 447 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 LCKP06239 509 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 EDNRAP25101 427 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 OR12D2P58182 307 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CWF19L1Q69YN2 538 aaKnown RBP13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PLBD1Q6P4A8 553 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 USP43Q70EL4 1123 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 TAMM41Q96BW9 452 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 TCTN2Q96GX1 697 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 KCTD7Q96MP8 289 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 TM9SF2Q99805 663 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 TUBA8Q9NY65 449 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-207ENST00000504761 ATXN7L1Q9ULK2 861 aaPredicted RBP13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PCDHGB7Q9Y5F8 929 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 A0A1W2PPC4 97 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 OSMP13725 252 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PLGLB1Q02325 96 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 UGT2A3Q6UWM9 527 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 YIPF7Q8N8F6 280 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 SGTBQ96EQ0 304 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CKLFQ9UBR5 152 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 RLFQ13129 1914 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 OR5K3A6NET4 321 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 FAM171A2A8MVW0 826 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 GREM1O60565 184 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 OPN1LWP04000 364 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 DNASE1L1P49184 302 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PTGES3Q15185 160 aaKnown RBP13.23□□□□□ -0.29
TCOF1-207ENST00000504761 MZT2BQ6NZ67 158 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 ZCCHC12Q6PEW1 402 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 UBQLNLQ8IYU4 475 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 RCBTB1Q8NDN9 531 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 OR6N1Q8NGY5 312 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 NKD1Q969G9 470 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 COX4I2Q96KJ9 171 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PHOX2BQ99453 314 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 PPP4R1LQ9P1A2 415 aa13.23□□□□□ -0.29
TCOF1-207ENST00000504761 CACNA1IQ9P0X4 2223 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 NINQ8N4C6 2090 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 ZNF26P17031 533 aaPredicted RBP13.22□□□□□ -0.29
TCOF1-207ENST00000504761 PPP2R2BQ00005 443 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 ZP2Q05996 745 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.22□□□□□ -0.291e-6■■□□□ 12.9
TCOF1-207ENST00000504761 PUS10Q3MIT2 529 aaKnown RBP13.22□□□□□ -0.29
TCOF1-207ENST00000504761 TMEM225Q6GV28 225 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 PODNL1Q6PEZ8 512 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 TMEM184AQ6ZMB5 413 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 IGFN1Q86VF2 1251 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 OR52E2Q8NGJ4 325 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 OR6N2Q8NGY6 317 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 NR4A3Q92570 626 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 TCF7L1Q9HCS4 588 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 VDAC3Q9Y277 283 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 SPTBP11277 2137 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 EPOPA6NHQ4 379 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 PABPC4LP0CB38 370 aaKnown RBP13.22□□□□□ -0.29
TCOF1-207ENST00000504761 PEPDP12955 493 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 SDC2P34741 201 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 DUSP7Q16829 419 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 SLC48A1Q6P1K1 146 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 GATAD2BQ8WXI9 593 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 CTRCQ99895 268 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 CEP250Q9BV73 2442 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 OTOFQ9HC10 1997 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 A0A1B0GTW7 788 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 FAM240BA0A1B0GVZ2 78 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 CCDC182A6NF36 153 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 OR2W5A6NFC9 320 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 MAOAP21397 527 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 SSTR4P31391 388 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 CASRP41180 1078 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 ZNF619Q8N2I2 560 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 MFSD2AQ8NA29 543 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 COMMD4Q9H0A8 199 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 C1GALT1Q9NS00 363 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 PEX16Q9Y5Y5 336 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 PTPRFP10586 1907 aa13.22□□□□□ -0.29
TCOF1-207ENST00000504761 TRBV4-1A0A0J9YWV2 114 aa13.21□□□□□ -0.29
TCOF1-207ENST00000504761 FABP12A6NFH5 140 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms