RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 PIK3R3Q92569 461 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 FAM120BQ96EK7 910 aaKnown RBP12.99□□□□□ -0.33
VAMP4-203ENST00000474047 YIPF4Q9BSR8 244 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 WDR55Q9H6Y2 383 aaPredicted RBP12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SDHAF3Q9NRP4 125 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 TNFRSF10DQ9UBN6 386 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 FAF1Q9UNN5 650 aaPredicted RBP12.99□□□□□ -0.33
VAMP4-203ENST00000474047 RELNP78509 3460 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 GXYLT2A0PJZ3 443 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 FIGNL2A6NMB9 653 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SDHDO14521 159 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SNPHO15079 494 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SCO2O43819 266 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 CBR3O75828 277 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 IL33O95760 270 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 EPHA3P29320 983 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 KIR3DL1P43629 444 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 CLNS1AP54105 237 aaKnown RBP12.99□□□□□ -0.33
VAMP4-203ENST00000474047 NME5P56597 212 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 C21orf58P58505 322 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 OCRLQ01968 901 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 OR4F3Q6IEY1 312 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 BHLHB9Q6PI77 547 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 XKRXQ6PP77 449 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 COX18Q8N8Q8 333 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 PIWIL2Q8TC59 973 aaKnown RBP12.99□□□□□ -0.33
VAMP4-203ENST00000474047 ZBTB18Q99592 522 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 NEUROD4Q9HD90 331 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SERHLQ9NQF3 203 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 PNPLA3Q9NST1 481 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 COQ3Q9NZJ6 369 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 NTMQ9P121 344 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 PPP4R1LQ9P1A2 415 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 WIF1Q9Y5W5 379 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 ICE1Q9Y2F5 2266 aa12.99□□□□□ -0.33
VAMP4-203ENST00000474047 SPTBN1Q01082 2364 aaKnown RBP12.98□□□□□ -0.33
VAMP4-203ENST00000474047 CLDN1O95832 211 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 KRT16P08779 473 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 PTPN6P29350 595 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 S100A3P33764 101 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 EVI2BP34910 448 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 PTGDSP41222 190 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 ANXA8L1Q5VT79 327 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 FNDC7Q5VTL7 733 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 OR5M10Q6IEU7 315 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 OGFOD2Q6N063 350 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 MFSD12Q6NUT3 480 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 PLCZ1Q86YW0 608 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 SLC16A11Q8NCK7 471 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 OR4K17Q8NGC6 315 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 OR14L1PQ8NHC6 308 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 ITLN2Q8WWU7 325 aaPredicted RBP12.98□□□□□ -0.33
VAMP4-203ENST00000474047 MOAP1Q96BY2 351 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 C16orf58Q96GQ5 468 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 SH3GL2Q99962 352 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 TBL1XR1Q9BZK7 514 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 SIRT3Q9NTG7 399 aaPredicted RBP12.98□□□□□ -0.33
VAMP4-203ENST00000474047 INTS9Q9NV88 658 aaKnown RBP12.98□□□□□ -0.33
VAMP4-203ENST00000474047 HECTD1Q9ULT8 2610 aa12.98□□□□□ -0.33
VAMP4-203ENST00000474047 NCKAP5O14513 1909 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 PTPN13Q12923 2485 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 DIAPH2O60879 1101 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 NKX2-2O95096 273 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 CPSF4O95639 269 aaKnown RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 HMGN2P05204 90 aaKnown RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 HPNP05981 417 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 FREM3P0C091 2139 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 HPGDP15428 266 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 PPP2R2AP63151 447 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 STX5Q13190 355 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 LASP1Q14847 261 aaKnown RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 DPY19L1Q2PZI1 675 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 WIPI1Q5MNZ9 446 aaPredicted RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 CAMKMTQ7Z624 323 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 GALNT10Q86SR1 603 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 YRDCQ86U90 279 aaKnown RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 OR4A15Q8NGL6 344 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 OR10Q1Q8NGQ4 319 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 SFXN5Q8TD22 340 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 ADAMTS15Q8TE58 950 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 PHF10Q8WUB8 498 aaKnown RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 OTUB1Q96FW1 271 aaPredicted RBP12.97□□□□□ -0.33
VAMP4-203ENST00000474047 ACTRT3Q9BYD9 372 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 UBQLN3Q9H347 655 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 CXorf36Q9H7Y0 433 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 SPRR3Q9UBC9 169 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 DKKL1Q9UK85 242 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 ABCG2Q9UNQ0 655 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 SLC6A5Q9Y345 797 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 PCDHGB3Q9Y5G1 929 aa12.97□□□□□ -0.33
VAMP4-203ENST00000474047 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 PRSS44E7EML9 344 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 RNASET2O00584 256 aaKnown RBP12.96□□□□□ -0.33
VAMP4-203ENST00000474047 WDR1O75083 606 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 SOX30O94993 753 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 UTS2O95399 124 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 ACP2P11117 423 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 GABRA1P14867 456 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 ATP6V1C1P21283 382 aa12.96□□□□□ -0.33
VAMP4-203ENST00000474047 ACVR2AP27037 513 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms