RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 PIP5K1CO60331 668 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ACP2P11117 423 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 GNSP15586 552 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 UGT2B7P16662 529 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 NDUFS1P28331 727 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PRKAR1BP31321 381 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CTHP32929 405 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SOX18P35713 384 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 IFNGR2P38484 337 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 KIAA1024LP59773 190 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 DUSP5Q16690 384 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PUS10Q3MIT2 529 aaKnown RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 KLHL22Q53GT1 634 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TRMT12Q53H54 448 aaKnown RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 FCRL6Q6DN72 434 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 HEPHL1Q6MZM0 1159 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SLC36A4Q6YBV0 504 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM184AQ6ZMB5 413 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 GDPGP1Q6ZNW5 385 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PLEKHM3Q6ZWE6 761 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 NRMQ8IXM6 262 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PSD4Q8NDX1 1056 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ANKK1Q8NFD2 765 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 OR4K14Q8NGD5 310 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 NT5CQ8TCD5 201 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 GPR151Q8TDV0 419 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TMEM255BQ8WV15 326 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 PATE1Q8WXA2 126 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 GATAD2BQ8WXI9 593 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TM9SF4Q92544 642 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ITPKCQ96DU7 683 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 TM4SF19Q96DZ7 209 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 MS4A4EQ96PG1 132 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SLC30A2Q9BRI3 323 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 RACGAP1Q9H0H5 632 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 LMAN2LQ9H0V9 348 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 CRNNQ9UBG3 495 aaPredicted RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 SSR3Q9UNL2 185 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF232Q9UNY5 417 aa8.36□□□□□ -1.07
SYNE1-217ENST00000466159 MRPS2Q9Y399 296 aaKnown RBP8.36□□□□□ -1.07
SYNE1-217ENST00000466159 DUXAA6NLW8 204 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 AP3D1O14617 1153 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SSX4O60224 188 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SMIM10L1P0DMW3 83 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 CPEP16870 476 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 MYL12AP19105 171 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 CD79BP40259 229 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 MTNR1AP48039 350 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 RNF144AP50876 292 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 RORCP51449 518 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 WNT4P56705 351 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SUZ12Q15022 739 aaKnown RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 C22orf42Q6IC83 251 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 DESI1Q6ICB0 168 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 TYW3Q6IPR3 259 aaKnown RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 CDC73Q6P1J9 531 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 KIAA1324Q6UXG2 1013 aaKnown RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 RASSF6Q6ZTQ3 369 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 GDPD3Q7L5L3 318 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 PRSS41Q7RTY9 318 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 GDF7Q7Z4P5 450 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 MRGPREQ86SM8 312 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SFTPA2Q8IWL1 248 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 OR9Q1Q8NGQ5 310 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 OR4Q3Q8NH05 313 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 PIGXQ8TBF5 258 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SLC22A18Q96BI1 424 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SMIM10Q96HG1 83 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 MRGPRX1Q96LB2 322 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 NELL2Q99435 816 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 TXNL4BQ9NX01 149 aaKnown RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 KLHL28Q9NXS3 571 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 PCOLCE2Q9UKZ9 415 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 DAPP1Q9UN19 280 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF443Q9Y2A4 671 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 NCKAP1Q9Y2A7 1128 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 WDR45Q9Y484 360 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 SMIM30A4D0T7 59 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 A6NCN8 305 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 OR6C74A6NCV1 312 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 LDB3O75112 727 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 CDRT1O95170 752 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 PTTG1O95997 202 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 EIF2S1P05198 315 aaKnown RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 HOXC4P09017 264 aaPredicted RBP8.35□□□□□ -1.07
SYNE1-217ENST00000466159 TSPAN19P0C672 248 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 CLEC2LP0C7M8 214 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 PVRP15151 417 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 RAB40BQ12829 278 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 GPR18Q14330 331 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 KIR2DS3Q14952 304 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 GPR68Q15743 365 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 ZMAT1Q5H9K5 638 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 C3orf38Q5JPI3 329 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 FIGLAQ6QHK4 219 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 ZNF836Q6ZNA1 936 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 LHFPL3Q86UP9 236 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 LAX1Q8IWV1 398 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 OR2L13Q8N349 312 aa8.35□□□□□ -1.07
SYNE1-217ENST00000466159 ACOT11Q8WXI4 607 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms